Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttactaaatggtttgtctatctaagtattcttctttattaataatggttttatatatgtttcatctttatctgctttcattgtttgttttggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG

Basic information

species Glycine max
transcript GLYMA07G03680.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03680.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
gttactaaatggtttgtctatctaagtattcttctttattaataatggttttatatat-gtttcatctttatctgct-ttcattgtttgttttggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG
 |||  |    |  |||   | | ||| |  | | ||  |   |||| ||||  |  | || |  | ||  ||     || |||  || | || | | |||||||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||| |
-ttaagatgatgcctgttctttttagt-tcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126582|gb|BG791020.1|BG791020
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttatatatgtttcatctttatctgctttcattgtttgttttggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAGGTG
                                      tttgtttt  CT-rich tract
     ttatatatgtttcatc  TA-rich tract