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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttactaaatggtttgtctatctaagtattcttctttattaataatggttttatatatgtttcatctttatctgctttcattgtttgttttggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAG

Basic information

species Glycine max
transcript GLYMA07G03680.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03680.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g06000.t01 (Vitis vinifera), 3'ss of exon 3
gttactaaatggtttgtctatctaagtattcttctttattaataatggttttatatat-gtttcatctttatctgct-ttcattgtttgttttggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAG---
 |||  |    |  |||   | | ||| |  | | ||  |   |||| ||||  |  | || |  | ||  ||     || |||  || | || | | |||||||||||||||||| ||  | ||||||||||||||||| ||||| || ||||| ||||||||||   
-ttaagatgatgcctgttctttttagt-tcatgccttggtgccaatgattttggaagtagtattttgttagtccataatttattcattttgtttgcttatagGAAGCACCTGCTGTGGTTCAGTCTTACTATGATAAAAGAATAGTTGGGTGCCCTGGAGGTGAAGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31308540|gb|CD393743.1|CD393743
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192330937|gb|FK023110.1|FK023110
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|31476276|gb|CD418304.1|CD418304
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|58024911|gb|CX711652.1|CX711652
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|14126582|gb|BG791020.1|BG791020
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|31306843|gb|CD392046.1|CD392046
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|120496630|gb|EH224797.1|EH224797
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|15812956|gb|BI785231.1|BI785231
EST:     TTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: TTGAAATAGACCATCCCGAAGGTCCATTCGGCACAAAGgtcagtctta ... tggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttttatatatgtttcatctttatctgctttcattgtttgttttggttcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGCCCAGGAGGTGAAG
                                      tttgtttt  CT-rich tract
     ttatatatgtttcatc  TA-rich tract