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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactatagaatagtccaaatgaaaatactaccaacaacaattactgttgttattaacttatttataattagtatactactaaattgagtgaaatattatttaaaagtatcatcaggtacatactgtgttggctttatcagaacaaagaatcctaattatttaaattctttctttcttgtgtgtgtgatggattgcagCATAGGAGCCAAAAAGGTGAAAGCAGAGTGCAATCTGTTCAGGGAATATTGCAGGACAGGAAATGCAGAAGG

Basic information

species Glycine max
transcript GLYMA07G01840.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01840.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv09s0002g03520.t01 (Vitis vinifera), 3'ss of exon 3
gtaactatagaatagtccaaatgaaaatactaccaacaacaattactgttgttattaacttatttataattagtatactactaaattgagtgaaatattatttaaaagtatcatcaggtacatactgtgttggctttatcagaacaaagaatcctaattatttaaattctttctttcttgtgtgtgtgatggattgcagCATAGGAGCCAAAAAGGTGAAAGCAGAGTGCAATCTGTTCAGGGAATATTGCAGGACAGGAAATGCAGAAGG
                                  || || || || |    |||  || | | ||| ||||   | |  ||  |  | |   |||||||  || || |||||| || | | || |||| |||  ||      |||||| ||| |              |||| |||||| |        ||||| ||||||| |||||||||||||| || |  || ||||  ||||| || |||||||||| | ||||||||| ||||||
--------------------------------gtaataaaaaataattaaatta--aattaaattaaaattttaaaaaaaccca--taaaacaaatattcatttaaggtatcaccaagaatattctgtcttgtttt------aacaaataattcc-------------ctttttttcttat--------tggat-gcagCATTGGAGCCAAAAAGGTAAAGGGTGAATGCACACTGTTTAGAGAATATTGCAAGGCAGGAAATGGAGAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagaatcctaattatttaaattctttctttcttgtgtgtgtgatggattgcagCATAGGAGCCAAAAAGGTGAAAGCAGAGTGCAATCTGTTCAGGGAATATTGCAGGACAGGAAATGCAGAAGG
       tcctaat  putative branch site (score: 2)
     aatcctaattatttaa  TA-rich tract