1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgagatatttatataggattgacacctatggttaaaaggtcatatcttgcatgccttctttgcaatttctagttaaatcatcaactaatatttgatatttactatgctcatacagGGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATAAG
species | Glycine max |
transcript | GLYMA07G01660.5 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAG GGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATAEST: gi|192315625|gb|FK007453.1|FK007453
genomic: GGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAGgtatgtgaga ... gctcatacagGGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATA
EST: GGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAG GGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATAEST: gi|163921205|gb|EH039507.1|EH039507
genomic: GGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAGgtatgtgaga ... gctcatacagGGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATA
EST: GGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAG GGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATAEST: gi|192315626|gb|FK007454.1|FK007454
genomic: GGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAGgtatgtgaga ... gctcatacagGGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATA
EST: GGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAG GGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATA
genomic: GGTGCTGAATTTGCCTAGTTTTGGAGGACTTCCTCAATGGGCTGTAGTAGgtatgtgaga ... gctcatacagGGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATA
tgcaatttctagttaaatcatcaactaatatttgatatttactatgctcatacagGGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATAAG
ttaaatcatcaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgagatatttatataggattgacacctatggttaaaaggtcatatcttgcatgccttctttgcaatttctagttaaatcatcaactaatatttgatatttactatgctcatacagGGGACACATTCCCAGTTGGTTGCAGATTTGATGAATCCATTGTTCACCATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT