1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtggttaaatgtattggagctagtgcttagttatgtagtatgagttcatttaattagtttgctaagattcattggcctgatgggtgcttgtctataggtttctgctttgtattcccttgacccttgaagctctgaattgaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAGTCAATCAACAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAAC
species | Glycine max |
transcript | GLYMA07G01240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAGEST: gi|208078507|gb|GD873561.1|GD873561
genomic: GAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggtt ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAG
EST: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTACCAGTTGCTGTTCATAGACAAAGGAGEST: gi|42722573|gb|CK768472.1|CK768472
genomic: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggtt ... gaacatgcagGATTTTGGATAACCTT-CCAGTTGCTGTTCATAGACAAAGGAG
EST: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAGEST: gi|213592925|gb|DB966030.1|DB966030
genomic: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggtt ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAG
EST: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAGEST: gi|192310001|gb|FK000621.1|FK000621
genomic: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggtt ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAG
EST: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAG
genomic: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggtt ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAG
ataggtttctgctttgtattcccttgacccttgaagctctgaattgaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAGTCAATCAACAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAAC
ccttgac putative branch site (score: 4)
tttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtggttaaatgtattggagctagtgcttagttatgtagtatgagttcatttaattagtttgctaagattcattggcctgatgggtgcttgtctataggtttctgctttgtattcccttgacccttgaagctctgaattgaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCATAGACAAAGGAGGGATGGAAGTCAATCAACAACATATGAACATGGTTTTCGTGTTGGGTTCAAAGGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA