1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gtggaaaacatagagacgaacacagttatatttgcctttatctattcccttttaatactcattcatatcttacaagtcaatgtttcttctctgattccagGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCGATTGCTGCTGGTGTAAATGTTATGGATTTACGTCATGGAATAAA
species | Glycine max |
transcript | GLYMA07G01190.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTACCAACACTGCTGCTGGAGATG GTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAEST: gi|209715709|gb|BW674371.1|BW674371
genomic: GGCTACCAACACTGCTGCTGGAGATGgtgattactt ... ctgattccagGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCA
EST: GGATCTAGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATG GTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAEST: gi|213599219|gb|DB962270.1|DB962270
genomic: GGATCTAGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATGgtgattactt ... ctgattccagGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCA
EST: GGATCTAGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATG GTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCA
genomic: GGATCTAGTCAAGCAGGTGGCCAAGGCTACCAACACTGCTGCTGGAGATGgtgattactt ... ctgattccagGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCA
tcccttttaatactcattcatatcttacaagtcaatgtttcttctctgattccagGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCGATTGCTGCTGGTGTAAATGTTATGGATTTACGTCATGGAATAAA
tttcttctctgattcc CT-rich tract
tttaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggaaaacatagagacgaacacagttatatttgcctttatctattcccttttaatactcattcatatcttacaagtcaatgtttcttctctgattccagGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCGATTGCTGCTGGTGTAAATGTTATGGATTTACGTCATGGAATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- ggaaaac
- - - - - - - - - - - - - - - - tgccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cattcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt