1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatttttggttgtatttgctatctggatttaaaacctgatgcgtctttactgatcatgctctgtgtttattcctctgtatgccttttacagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGG
species | Glycine max |
transcript | GLYMA07G01000.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAG GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTEST: gi|38192954|gb|CF922160.1|CF922160
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGgtatttttgg ... ccttttacagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTT
EST: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAG GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACGTGGATCTCATTCTCTTEST: gi|13312601|gb|BG406252.1|BG406252
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGgtatttttgg ... ccttttacagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTT
EST: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAG GAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTC
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACTCTTCTGTTGAGgtatttttgg ... ccttttacagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTC
tgatgcgtctttactgatcatgctctgtgtttattcctctgtatgccttttacagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGG
tactgat putative branch site (score: 2)
tgcctttt putative PPT
tgtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttggttgtatttgctatctggatttaaaacctgatgcgtctttactgatcatgctctgtgtttattcctctgtatgccttttacagGAGCAATGTTGACAAAAGAGAGGCACTTGAGAACTTGGATCTCATTCTCTTGTGTCTTGACGAGATTGTTGATGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG