1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactttgcttgacattctttcaatgtcaggagttagatgcttttatctatccatgcatcactcgtgtgttacctttccgtgtgcatgtatctatctatttatattttagtgtagcatcatgcattagaaaaattagtttagtttttgaacctaatgtatgtgattaaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAG
species | Glycine max |
transcript | GLYMA07G00420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|19269340|gb|BM885596.1|BM885596
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: TATGACATGATTGGGGGGTTTAGACAA-CAAATTAAAGAAAATAAA-GAG GGCATTGAGCTACCEST: gi|6912974|gb|AW394562.1|AW394562
genomic: TATGACATGATTGGTGG-TTTAGACCAGCAAATTAAAGAAA-TAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACC
EST: ATATGACATTGATTG-TGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATEST: gi|151403300|gb|EV273110.1|EV273110
genomic: ATATGACAT-GATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACAT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|37995024|gb|CF806613.1|CF806613
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|208195518|gb|GD993449.1|GD993449
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAA-GAG GTCATTGAGCTACCAATCAAACATEST: gi|213617885|gb|DB957366.1|DB957366
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACAT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCEST: gi|298197166|gb|HO041909.1|HO041909
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATC
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTAEST: gi|18732952|gb|BM527342.1|BM527342
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTA
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|213599336|gb|DB972278.1|DB972278
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCEST: gi|15589715|gb|BI674331.1|BI674331
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATC
EST: AAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|37997219|gb|CF808808.1|CF808808
genomic: AAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|16281256|gb|BI944393.1|BI944393
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|213587656|gb|DB971379.1|DB971379
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGEST: gi|213618287|gb|DB973057.1|DB973057
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTG
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGEST: gi|120534038|gb|EH262171.1|EH262171
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTG
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|18039807|gb|BM308101.1|BM308101
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|16281818|gb|BI944685.1|BI944685
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|18041169|gb|BM309454.1|BM309454
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGEST: gi|37995944|gb|CF807533.1|CF807533
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTG
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|19052933|gb|BM731600.1|BM731600
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|193689693|gb|FK632268.1|FK632268
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTEST: gi|37995965|gb|CF807554.1|CF807554
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
EST: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAG GTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
genomic: CATATGACATGATTGGTGGTTTAGACCAGCAAATTAAAGAAATAAAAGAGgtactttgct ... aaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATT
gcattagaaaaattagtttagtttttgaacctaatgtatgtgattaaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAG
acctaat putative branch site (score: 3)
aaaaattagtttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttgcttgacattctttcaatgtcaggagttagatgcttttatctatccatgcatcactcgtgtgttacctttccgtgtgcatgtatctatctatttatattttagtgtagcatcatgcattagaaaaattagtttagtttttgaacctaatgtatgtgattaaatgtacagGTCATTGAGCTACCAATCAAACATCCTGAGCTGTTTGAAAGTCTTGGAATTGCACAACCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT