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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaaagaattttataaaacaaaacaattttctttctcggtatttttactcacacttgcacataacaaatttccttgttgatcttcagttttgacttttgattttaacctttgttacataccctattggctcagGTATATGAATTTGTTGGACTAAGTGAGCTCTATTATGCTGGTAGTCATGGAATGGACATTATTGGTCCTCCTAGACAATCTAATTCTGATAATCACCCTG

Basic information

species Glycine max
transcript GLYMA06G47630.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G47630.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0022g00660.t01 (Vitis vinifera), 3'ss of exon 3
gtatttaaagaattttataaaacaaaacaattttctttc-tcggtatttttactcacacttgcacataacaaatttccttgttgatcttcagttttgacttttgattttaacc--tttgttacataccctattg---gctcagGTATATGAATTTGTTGGACTAAGTGAGCTCTATTATGCTGGTAGTCATGGAATGGACATTATTGGTCCTCCTAGACAATCTAATTCTGATAATCACCCTG
||| ||       |||  |         | | || |    ||  |||    | |  | |      ||| ||  |||||||      ||  || |  |  |||| || || ||    ||||||| || |||| |      | |||| ||| | ||||| |||||||  |||||||| || |||||||||||||| |||||||| || || |||   ||||| || | |||| || | || ||  
gtaattggcaggcttttgagtgtgtgctattattttaaaatcattatggcaatttcctcccatttatatcagttttcctt------ctatagat--ggtttttcatcttcactgacttgttacgtaacctactattcatttagGTGTATAATTTTGTGGGACTAACAGAGCTCTACTACGCTGGTAGTCATGGGATGGACATCATGGGCCCTGTCAGACACTCCATTTCTAATGACCATCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcttcagttttgacttttgattttaacctttgttacataccctattggctcagGTATATGAATTTGTTGGACTAAGTGAGCTCTATTATGCTGGTAGTCATGGAATGGACATTATTGGTCCTCCTAGACAATCTAATTCTGATAATCACCCTG
                      ttttaac  putative branch site (score: 2)
                                         ccctatt  putative PPT
              acttttgattttaa  TA-rich tract