Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatcaagataattccaatagaaaaagttaattttttaagggttttttgttttatttatctctaaaggattggattatgtggaaagGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGGCCATGTTGATGACCTTGTACAAAGGT

Basic information

species Glycine max
transcript GLYMA06G46740.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G46740.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g58910.1 (Oryza sativa), 3'ss of exon 3
--------------------gtaaaatcaagataattccaatag-aaaaagttaattttttaagggttttttgttttatttatctctaaaggattggattatgtggaaagGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGGCCATGTTGATGACCTTGTACAAAGGT
                    | ||||| ||  | |    || |  ||  ||   |     | | |    ||||    |   || |   |  | |  |  ||  | || |||||||||||| |  || ||||||||||||| ||||| || |||||||  || ||  ||||||||||||| || || ||| |||||||  ||||||| || 
gtagattatatatatcttctgaaaaatgaaactgagatgaacattaagcagactagcagatcaagtcagtttggagcaagcatttgacattgctgtgtataattcgacagGATGGAGAAGGTTGACCTGAAGAAGGTGAGGTGCCAGGCGAAGGTGGCCGGGACGCTGGTGACGGTGGCCGGCGCGATGATGATGACGCTGTACAAGGGC

upper sequence: GLYMA06G46740.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G136567_T02 (Zea mays), 3'ss of exon 2
--------------------------------------------------------------------------gtaaaatcaagataattccaataga-aaaagttaattttttaagggttttttgttttatttatctctaaaggattggattatgtg-------------gaaagGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGGCCATGTTGATGACCTTGTACAAAGGT
                                                                            | ||| ||  ||   | |||||  || |  ||  |      | |   || || |  |  ||  | || | | ||  | || |              |  |||||||||||| | ||| ||||||||| ||| |||   ||||||||||| |||||  | ||||||||||| || |||||| | |||||  | ||||| || 
gtatatatatatacacgcatatatactcatgagctagcgctggaacgagcaagaactaagaaacacaagcagcaaaataatgaaagtatagcaaataggcaacacgtacgtacagttgtggcattggtgtggtggataacaaacgaactgattgatataacggatacgtaccgtcagGATGGAGAAGGTGAACCTGAAGAAGGCGAGGTGCGTGGCCAAGGTGGTAGGAACGCTCGTGACGGTGGCCGGCGCCATGCTCATGACGCTCTACAAGGGC

upper sequence: GLYMA06G46740.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 3
--------------------gtaaaatcaagataattccaatagaaaaagttaattt---tttaagggttttttgttttattta-----------tctctaaaggattgga--ttatg----tggaaagGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGGCCATGTTGATGACCTTGTACAAAGGT
                     || |||||  ||  |    || |      | | |||   |||  ||||||  ||| ||  | |           | | |||    || ||  | |||    || |||| |||||||| ||  |||||||||  || || |||||||| ||||| || || ||  | ||||| ||||||||||| ||| |||||||||||||||| || 
gtacgattatcaatctcaatatataatcatcatcgtcatgatcgctgtgatcattttatttttcggggtttggtgtattgatcacatgggctaattttgtaacatgtttgacatgatggaattgaaaagAATGGAGAAAATAGACATGAAGAGAGTAAGGTGCCAAGCAAAGGTTGTTGGGACTATTGTGACAGTGGCTGGGGCAATGGTGATGACCTTGTACAAGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453389|gb|BM954799.1|BM954799
EST:     ATGAGCAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTTTTATGCCG                         GATGGAGAAGATCAACATGAAGAANGTGAGATGCCAAGCCAAGGTGGTGGG
genomic: ATGAGCAACGTGCTTCCTGCCATGACTTTTGTTATGGCAGTTTTATGCCGgtaaaatcaa ... atgtggaaagGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGG
EST: gi|209710126|gb|BW681066.1|BW681066
EST:     GAGCAACGTGCTTCCTGCCATGNNACTTT-GT-ATGGCAGTTTTATGCCG                         GATGGAGAAG-TCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGG
genomic: GAGCAACGTGCTTCCTGCCATG--ACTTTTGTTATGGCAGTTTTATGCCGgtaaaatcaa ... atgtggaaagGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttaagggttttttgttttatttatctctaaaggattggattatgtggaaagGATGGAGAAGATCAACATGAAGAAGGTGAGATGCCAAGCCAAGGTGGTGGGAACATTGGTGACGGTGGCTGGGGCCATGTTGATGACCTTGTACAAAGGT
                            ctctaaa  putative branch site (score: 3)
           ttttttgttttattta  TA-rich tract