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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaaccttgttgcctaattgatatttatcataatatgttgatgcatatttcatatttcatatggttgatagactttctgtctaatttgtttgtgcagGATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG

Basic information

species Glycine max
transcript GLYMA06G44390.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20448672|gb|BQ252796.1|BQ252796
EST:     TGAGCTTCCAGAAAAATACAGAAGAGATGGTCTTCCAACGCTACTTTATG                         GATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
genomic: TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATGgtacaaacct ... gtttgtgcagGATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
EST: gi|209720745|gb|BW657747.1|BW657747
EST:     TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATG                         GATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
genomic: TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATGgtacaaacct ... gtttgtgcagGATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
EST: gi|19054064|gb|BM732731.1|BM732731
EST:     TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATG                         GATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
genomic: TGAGCTTCCAGAAAAATACAGAAGAGATGCTCTTCCAACGCTACTTTATGgtacaaacct ... gtttgtgcagGATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatatttcatatttcatatggttgatagactttctgtctaatttgtttgtgcagGATTTAGATTCTGGATCCCTGTCAGTGTATTAAATTTCTG
                                    gtctaat  putative branch site (score: 3)
 tttgttt  CT-rich tract
 tttcatatttcatat  TA-rich tract