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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaaatttatgttgatgattatgtatttcttatttgcgtctattgattgggtacttttgtagttgtgagtaatccctgtaatttttatttctttatacagTTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAG

Basic information

species Glycine max
transcript GLYMA06G43820.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G43820.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g54910.1 (Oryza sativa), 3'ss of exon 3
-taaaatttatgttgatgattatgtatttcttatttgcgtctattgattgggtacttttgtagttgtgagtaatccctg--taatttttatttctttatacagTTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAG
   | ||  |   | ||  | || ||||| |    |   | |||       ||| | || |  |||  |    ||  |   |||    |  | ||  | ||||||   || ||||| ||  ||||||| |||||| ||||||||||| ||||||| || |||||||||||||
aatagataaagcattatattcat-tatttttggcatatatatatatccctagta-tattatgtttgctatagctctttaactaaccaattatactcca-acagTTTCGGAAGAGACCTGCAATGAAGTAGAGAGCTTGGTGTTTGATCTATTTGCAAATCTTGGTGCTACAG

upper sequence: GLYMA06G43820.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 3
taaaatttatgttgatgattatgtatttcttatttgcgtctattgattgggtacttttgtagttgtgagta---atccctgtaatttttatt--tctttatacagTTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAG
  | |||   |  ||    |      |||| | || | |   |  ||| |  ||||||    | | | | |   || | | |  | || |||  | ||| | |||||| ||||||||  ||||||||||||||||| || || |||||| | ||||| || |||||||||||||
--agatt---gccgaaacattctctcttctgaatttctttactgaatttgcaactttttctttggcgtgcaccaattcttctgttcttgattgttttttttgcagTTACTGAGGAGAGGTGTGATGAAGTTGAGAGTCTAGTCTTTGATCTTTTTGCAAATCTTGGTGCTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgggtacttttgtagttgtgagtaatccctgtaatttttatttctttatacagTTAGTGAGGAGACATGTGATGAAGTTGAGAGCCTGGTGTTTGATTTATTTGCCAACCTTGGTGCTACAG
 tattgat  putative branch site (score: 3)
                                    tttttatttctttat  putative PPT
                               tgtaatttttatttct  TA-rich tract