Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgctcgtcgtatattatcggtctctttattttccttattagtatttaggcattatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA

Basic information

species Glycine max
transcript GLYMA06G42890.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 3'ss of exon 3
--------------------------gtattgctcgtcgt-atattatcggtctctttattttccttattagtatttaggcattatcaatgatgtgcattgt--tacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
                          | ||| |    ||| | |||| |  |  |   |    |      |     ||  | | | | |  || ||   |||  | |   ||| |||||||||||||||| || |||||||||||||| |||||||| || || ||||| ||||||||||| ||  | ||| | ||||| ||||||||| | |
gtgccctgtccaaccatacaattttagaatttcctagcgttacattaacttttaccacagccactcgcacatacactaaccttcaactaaaatatggtgtgttttgcaaacagATGATCAATGAGAAGCCCCAGGTGATCCAGGAGTACGAGTCAGGTAAAGCTATTCCGAACCAGCAGATCATCGGGAAGCTTGAAAGGGCTCTTGGAACAA

upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G101480_T01 (Zea mays), 3'ss of exon 3
-------gtattgct--cgtcgta-tattatcggt--ctctttattttccttattagtatttaggcattatcaatgatgtgcat----tgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
        |  || |   || ||| |   || | |  ||    | |  | | ||   |  || | |  | |    |||| | ||    ||||  |||||| |||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| | || || || || ||| | |
aaagtctatgctgttgttgtagtagttccattgatagctgggaagtagcttgatccttggttggcctctttatgagatgaggatatggtgttcattgcagATGATCAATGAGAAGCCACAGGTGATCCAGGAGTATGAGTCAGGCAAGGCAATTCCCAACCAGCAGATCATTGGCAAGCTCGAGAGGGCCCTGGGAACGA

upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G800112_T02 (Zea mays), 3'ss of exon 3
-------------gtattgctcgtc-gtatattatcggtctcttt--attttccttattagtatttaggc-atta-tca-atgatg-tgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
               ||||    || | |  | | |  |  ||    | |  | | ||   | ||| | | |||| ||| |||| | ||   ||||  ||| || |||| ||||||||||| || ||||| ||||||||||| ||||| ||||| || || ||||||||||| ||||||||| | || || || || ||| | |
gtacttggtggtatcattgggtttcagaacttcaaccatagctgagaagtagcttgatccttgtttggcctattaatcagatgaggatgtggtgtttattgtagATGATAAATGAGAAGCCACAGGTGATTCAGGAGTATGAATCAGGCAAGGCAATCCCCAACCAGCAGATCATTAGCAAGCTCGAGAGGGCCCTGGGAACCA

upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G800112_T01 (Zea mays), 3'ss of exon 3
-------------gtattgctcgtc-gtatattatcggtctcttt--attttccttattagtatttaggc-atta-tca-atgatg-tgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
               ||||    || | |  | | |  |  ||    | |  | | ||   | ||| | | |||| ||| |||| | ||   ||||  ||| || |||| ||||||||||| || ||||| ||||||||||| ||||| ||||| || || ||||||||||| |||||||                        
gtacttggtggtatcattgggtttcagaacttcaaccatagctgagaagtagcttgatccttgtttggcctattaatcagATGAGGATGTGGTGTTTATTGTAGATGATAAATGAGAAGCCACAGGTGATTCAGGAGTATGAATCAGGCAAGGCAATCCCCAACCAGCAGATCATTAGCA------------------------

upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G42680.1 (Arabidopsis thaliana), 3'ss of exon 3
--gtattgctcgtcgtatattatcggtctctttattttccttattagtatttagg--cattatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
   ||||   | ||      |||    ||  |||||  |||  || |||  | ||  ||| |  ||   | ||  |  ||   || || | |||||||||||||| |||||||| || ||||||||||| || || || || || |||||||| ||  ||   ||| |||| ||||| ||||||||||
gtatattatccttctctctatatgtcccttattattaccctattttgtaactcggttcatgacaaagtgtttgtttctttttgtgtagATCATCAATGAGAAGCCACAAGTGATTCAAGAGTATGAGTCTGGCAAAGCTATACCCAACCAGCAAATCCTTTCTAAGCTGGAGAGAGCGCTTGGAGCTA

upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G58680.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattgctcgtcgtatat-tatcggtctctttattttccttattagtatttaggcatt--atcaatgatgtgcattgttact-tgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
||| |     |  | | | ||||  ||||||| |||| ||  |   |  | ||  |||  ||  ||  | ||  || | | | || ||||||||||||||||||| ||||||||||| || || ||||| ||||| || ||||| || || |||||  ||   ||| |||| || || ||||| ||||
gtactttcatttttctctgtatctttctctttcttttact-gtctttcgtcagtaattgaattcattgtatgggttttgattctgtagCTGATCAATGAGAAGCCACAAGTGATCCAAGAATACGAGTCTGGGAAAGCAATTCCGAATCAACAGATCCTTTCAAAGCTGGAGAGGGCACTTGGTGCTA

upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0028g02020.t01 (Vitis vinifera), 3'ss of exon 3
----gtattgctcgtcgtatattatcggtctctttattttccttattagtatttaggcattatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
     | || |||  | ||    ||  || || |  |   |   | | ||||  ||   |    |||||  || |   ||  |||||| ||||||||||||| |||||| | || || |||||||| || || || || |||||||| || |||||||||  ||||||||| || ||||||||||  |
gtaaatctttctc-ccttacccaatatgtatcctc-tccactgcactcgtat--agaactgcataatgaaatggagc-ttgtttgcagATGATCAATGAGAAACCTCAAATAATTCAAGAGTATGAATCTGGTAAAGCTATTCCAAATCAACAGATAATTGTCAAGTTGGAGAGGGCTCTTGGAGTGA

upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g01260.t01 (Vitis vinifera), 3'ss of exon 3
gtattgctcgtcgtatattatcggtctctttattttccttattagtatttaggc-attatcaat--gatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
||||  ||| |  | | || || | ||||     |||||  || ||| |||  | | ||||| |  |||     || |   |||||| |||| ||||||||||| |||||||| || |||||||||||||| || ||||||||||| || |||||||| | |||  ||||||| |||||||| |  |
gtatctctccttct-ttttgtccggctctg----ttcctagttcgtacttaatctaatatcactttgatcgttgttatattttgcagATGATTAATGAGAAGCCCCAAGTGATACAAGAGTATGAGTCAGGAAAAGCCATTCCAAATCAACAGATAATCACCAAACTGGAAAGGGCTCTTGGTGTGA

upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ33541 (Selaginella moellendorffii), 3'ss of exon 3
gtattgctcgtcgtatattatcggtctctttattttccttattagtatttaggcattatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
         ||  |  || || | |   ||  ||||   | || |   | |    || ||  || ||    ||| |   | ||||||||||| ||||||||||| || ||||| |||||||| || || || ||||| || ||||||||||| ||   |||| | ||  | || || ||||| |
---------gtt-tggatgattgattctttggttttttctttttg-gctgatttgttttccttgttggt--ttgcttggtccagCTGATCAACGAGAAGCCTCAGGTCATCCAAGAGTATGAATCGGGAAAAGCCATCCCCAACCAGCAGATCATCTCCAAGCTCGAGCGCGCGCTGGGAGCCA

upper sequence: GLYMA06G42890.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ36890 (Selaginella moellendorffii), 3'ss of exon 3
gtattgctcgtcgtatattatcggtctctttatttt-ccttattag-tatttaggcattatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
         ||  |  || || | |   ||  || |  ||| || | |  || |   |  |   || | ||| | ||      ||||||||||| ||||||||||| || ||||| |||||||| || || || ||||| || ||||||||||||||   |||| | ||  | || || ||||| |
---------gtt-tggatgattgattctttggttgtgtctttttggctgatttgttttccttgttggtttgcttggtc-----cagCTGATCAACGAGAAGCCTCAGGTCATCCAAGAGTATGAATCTGGAAAAGCCATCCCCAACCAGCAGATAATCTCCAAGCTCGAGCGCGCGCTGGGAGCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4396561|gb|AI495558.1|AI495558
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCCTCAAG-GATCCCAG-AGTATGAGTCAAGGAAGG
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCC-TCAAGTGATCC-AGGAGTATGAGTCAGGGAAGG
EST: gi|31310925|gb|CD396128.1|CD396128
EST:     AATGCAAGCTAGGATGGACCAAAAGCTTACTGCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: AATGCAAGCTAGGATGGACAAAAAGCTTACT-CAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|213589594|gb|DB982655.1|DB982655
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|23725189|gb|BU760542.1|BU760542
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|15337233|gb|BI497889.1|BI497889
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|213616979|gb|DB959291.1|DB959291
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|19053935|gb|BM732602.1|BM732602
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|21995101|gb|BQ786629.1|BQ786629
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|27425956|gb|CA937476.1|CA937476
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|10235158|gb|BE804046.1|BE804046
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|151396521|gb|EV266398.1|EV266398
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|9901341|gb|BE610309.1|BE610309
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|254315485|gb|GR825294.1|GR825294
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|254336035|gb|GR841360.1|GR841360
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|6725980|gb|AW310379.1|AW310379
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|209728958|gb|BW651735.1|BW651735
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|5509723|gb|AI856281.1|AI856281
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|10710695|gb|BF010413.1|BF010413
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|9563865|gb|BE473374.1|BE473374
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|298198593|gb|HO040132.1|HO040132
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTGACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|18040187|gb|BM308481.1|BM308481
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|254326261|gb|GR840853.1|GR840853
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|22540875|gb|BU090718.1|BU090718
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|209728957|gb|BW651734.1|BW651734
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|207831021|gb|GD805079.1|GD805079
EST:     AATGCAAGCTAGGATGGACAAAAAGACTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGNGTCAGGGGAAGGC
genomic: AATGCAAGCTAGGATGGACAAAAAG-CTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGG-AAGGC
EST: gi|21676875|gb|BQ629226.1|BQ629226
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|7232928|gb|AW568279.1|AW568279
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|213593559|gb|DB977391.1|DB977391
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|10710428|gb|BF010119.1|BF010119
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCANGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|254326260|gb|GR840852.1|GR840852
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|6502156|gb|AW203529.1|AW203529
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|7640472|gb|AW734773.1|AW734773
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|209701672|gb|BW660991.1|BW660991
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|58015384|gb|CX702126.1|CX702126
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|15199290|gb|BI423756.1|BI423756
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|5509732|gb|AI856290.1|AI856290
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|10231371|gb|BE800259.1|BE800259
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|213607561|gb|DB976635.1|DB976635
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|7588130|gb|AW703932.1|AW703932
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|21255917|gb|BQ452805.1|BQ452805
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|5510124|gb|AI856508.1|AI856508
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|213617330|gb|DB965201.1|DB965201
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|298167194|gb|HO010633.1|HO010633
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTGACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|213600956|gb|DB958450.1|DB958450
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|7796869|gb|AW782263.1|AW782263
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|10709862|gb|BF009586.1|BF009586
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|7041774|gb|AW471668.1|AW471668
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCANGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|254336034|gb|GR841359.1|GR841359
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGAAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|5510113|gb|AI856497.1|AI856497
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|298172601|gb|HO019641.1|HO019641
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTGACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGGGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|192324005|gb|FK019296.1|FK019296
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|21995227|gb|BQ786755.1|BQ786755
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|15202123|gb|BI425234.1|BI425234
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|254315484|gb|GR825293.1|GR825293
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|58015691|gb|CX702433.1|CX702433
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
EST: gi|209697662|gb|BW660990.1|BW660990
EST:     TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAA                         CTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC
genomic: TAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAgtattgctcg ... ttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttccttattagtatttaggcattatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA
         ttattagtattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattgctcgtcgtatattatcggtctctttattttccttattagtatttaggcattatcaatgatgtgcattgttacttgcagCTGATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAGGCCATTCCAAACCAGCAGATAATTAGCAAGTTGGAAAGAGCTCTTGGAGCTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT