1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttacagtccttatcatatacaatcactttctgtacttcctttctttttactccaagagtcattttcaattgtaacagtttatgatctactttttttcagGTCATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGAAACATATGCTTGTATATGTATACATGAGTA
species | Glycine max |
transcript | GLYMA06G41510.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAG GTCATGTTGTTGGGGAAGGTTACACCATAGAAATCTGTTGAAATTTGGTTGEST: gi|192326286|gb|FK017633.1|FK017633
genomic: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAGgtaggttgcc ... tttttttcagGTCATGTTGTTGGG-AAGGTTACACCATAGAAATCTGGTGAA-TTTGGTTG
EST: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAG GTCATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGA
genomic: AAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTAACACAGAGgtaggttgcc ... tttttttcagGTCATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGA
ttttactccaagagtcattttcaattgtaacagtttatgatctactttttttcagGTCATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGAAACATATGCTTGTATATGTATACATGAGTA
ttgtaac putative branch site (score: 2)
tctactttttttc putative PPT
attttcaattgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttacagtccttatcatatacaatcactttctgtacttcctttctttttactccaagagtcattttcaattgtaacagtttatgatctactttttttcagGTCATGTTGTTGGGAAGGTTACACCATAGAAATCTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGGAAACATATGCTTGTATATGTATACATGAGTA
- - - - - - - - - - caatcac
- - - - - - - - - - - - - - -tctgtac