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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcacaacagaaatatacaaaccatgtttatgttgctagattttagttggatcttttttatctgatttttcttccttttcatgttattccaatggaattataaagttttcacagatcctttgttcttattttctatttcaatttatgctaacttgagtattgtacttgtgatcagCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGAAGAACCATGTCCAGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAG

Basic information

species Glycine max
transcript GLYMA06G37080.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G37080.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g02660.t01 (Vitis vinifera), 3'ss of exon 2
gttcacaacagaaata-tacaaaccatgtttatgttgctagattttagttggatcttttttatctgatttttcttccttttcatgttattccaatggaattataaagttttcacagatcctttgttcttattttctatttcaatttatgctaacttgagtattgtacttgtgatcagCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGAAGAACCATGTCCAGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAG
          |||||| | |||  | |||||   ||  | ||||||       | |||| | | || ||| | | | | | |  ||  ||  |   || ||  ||||| ||   ||  | | |||   | | || | |||| |   |  || |  ||||| |||||||||||| ||| |||| ||  || | | |||||||||||||||||| ||||| |||||  |  | || ||| ||||||||||||| |||||  | || |||||||| || |
-----gtctggaaatagttcaattcgtgtttgaatttttggatttt-------ttttttgtgtttgttttatttccttctaccagtggttagagctgactt-caaagtctt---aggacttatgtctatttattttctttcta--caacctgatgtgagtgttgtacttgtgagcagTTATTCTGCACATTTAGCTCAAGAGAAGAAAAGAGCAGAACTATGTCTTGTTTGAGGCATCGAGTTCTTCCTCCTCAGTTGTTGTTGAAGTGGCCAAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcttattttctatttcaatttatgctaacttgagtattgtacttgtgatcagCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGAAGAACCATGTCCAGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAGTGGCCTAAAG
                         tgctaac  putative branch site (score: 1)
     ttattttctatttcaa  TA-rich tract