Sequence
atgc intronic sequence ATGC exonic sequencegtatacatagaatcttacaggttatgactactttaaatatttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG
Basic information
species | Glycine max |
transcript | GLYMA06G36130.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 4
gtatacatagaatcttacag-gttatgactacttt---aaatatttatcttttac-caaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG
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---------gtattttccagagtcttgatcaattaccagtaaatgaatctaccacacaaatgatta--ggttgcttatctaaattctttttcttccagGAAATCTCAGTTTTATCACAATGTCGATCTCCATATATTACCGAGTACTATGGTTCTTATCTGCACCAAACCAAACTATGGATAATAATGGAATACATGG
upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 3
lower sequence: EFJ15774 (Selaginella moellendorffii), 3'ss of exon 3
gtatacatagaatcttacaggttatgactactttaaatatttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG
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-----------------------gtagctgctgcatgttttctttatttcttgaagaacataagctcaagttttgatt----tcgcgtcacagGAAATTTCAGTGCTGTCTCAATGCCGATCACCATACATTACGGAGTATTATGGATCTTTCCTGCATGGAACAAAATTATGGATCGTTATGGAGTACATGG
upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 3
lower sequence: EFJ32910 (Selaginella moellendorffii), 3'ss of exon 3
gtatacatagaatcttacaggttatgactactttaaatatttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG
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-----------------------gtagctgctgttt-tctttatttttt------tgaagaacataagctcaagttttgatttcgcgtttcagGAAATTTCAGTGCTGTCTCAATGCCGGTCACCATACATTACGGAGTATTATGGATCTTTCCTGCATGGAACAAAATTATGGATCGTTATGGAGTACATGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213611344|gb|DB972745.1|DB972745EST: AGAGGATGAAATTGAGGACATTCAGAAG GAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTAT
genomic: AGAGGATGAAATTGAGGACATTCAGAAGgtatacatag ... tttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG
gtttaat putative branch site (score: 4)
tttaatgctttttctt CT-rich tract
aaatgtttaatgcttt TA-rich tract