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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacatagaatcttacaggttatgactactttaaatatttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG

Basic information

species Glycine max
transcript GLYMA06G36130.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 4
gtatacatagaatcttacag-gttatgactacttt---aaatatttatcttttac-caaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG
         | || || ||| ||  |||  | ||      | ||  ||||   || |||||| |||  | ||  |  ||||   | ||||| | ||||||||| || ||| | || ||||||||||||||||| ||||| ||||| |||||||| | |||  | ||||| ||||| ||||||||||||||||||||||
---------gtattttccagagtcttgatcaattaccagtaaatgaatctaccacacaaatgatta--ggttgcttatctaaattctttttcttccagGAAATCTCAGTTTTATCACAATGTCGATCTCCATATATTACCGAGTACTATGGTTCTTATCTGCACCAAACCAAACTATGGATAATAATGGAATACATGG

upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 3
lower sequence: EFJ15774 (Selaginella moellendorffii), 3'ss of exon 3
gtatacatagaatcttacaggttatgactactttaaatatttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG
                        |  || ||  |  | ||  |  |||    ||      | |||     ||  |||    |    || ||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||| || || ||  ||  ||| ||| | |||||  | ||||| |||||||
-----------------------gtagctgctgcatgttttctttatttcttgaagaacataagctcaagttttgatt----tcgcgtcacagGAAATTTCAGTGCTGTCTCAATGCCGATCACCATACATTACGGAGTATTATGGATCTTTCCTGCATGGAACAAAATTATGGATCGTTATGGAGTACATGG

upper sequence: GLYMA06G36130.3 (Glycine max), 3'ss of exon 3
lower sequence: EFJ32910 (Selaginella moellendorffii), 3'ss of exon 3
gtatacatagaatcttacaggttatgactactttaaatatttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG
                        |  || || |   | ||||| ||||      ||   ||       ||   | ||  |||    |  ||||||||||| || ||||||||||| || || ||||||||||| ||||||||||| || || ||  ||  ||| ||| | |||||  | ||||| |||||||
-----------------------gtagctgctgttt-tctttatttttt------tgaagaacataagctcaagttttgatttcgcgtttcagGAAATTTCAGTGCTGTCTCAATGCCGGTCACCATACATTACGGAGTATTATGGATCTTTCCTGCATGGAACAAAATTATGGATCGTTATGGAGTACATGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213611344|gb|DB972745.1|DB972745
EST:     AGAGGATGAAATTGAGGACATTCAGAAG                         GAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTAT
genomic: AGAGGATGAAATTGAGGACATTCAGAAGgtatacatag ... tttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatcttttaccaaatgtttaatgctttttcttctattatttttttttcccagGAAATTTCTGTTCTGTCTCAATGTCGATCTCCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGG
                  gtttaat  putative branch site (score: 4)
                   tttaatgctttttctt  CT-rich tract
              aaatgtttaatgcttt  TA-rich tract