Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtgtttctcaaaccataggggatgacaaaataattgatagacagacagatttgcttattggataatggtattattagaattcaaattttgaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTTGCTTAATTTGGCTGGCTCTATGGTAGCTTTTGTGTGTTGTACGGCTTCT

Basic information

species Glycine max
transcript GLYMA06G34850.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208143022|gb|GD941886.1|GD941886
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|193423239|gb|FK390600.1|FK390600
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|208199612|gb|GD999909.1|GD999909
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|208207767|gb|GE008066.1|GE008066
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|193407107|gb|FK374820.1|FK374820
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGACGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCT
EST: gi|208117606|gb|GD916392.1|GD916392
EST:     AGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: AGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|193384228|gb|FK352642.1|FK352642
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGACGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCT
EST: gi|208216064|gb|GE008972.1|GE008972
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|208283987|gb|GE087293.1|GE087293
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|208169033|gb|GD971418.1|GD971418
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|207815552|gb|GD789137.1|GD789137
EST:     TACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|208263219|gb|GE064291.1|GE064291
EST:     GAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: GAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|193668200|gb|FK609274.1|FK609274
EST:     TTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|193635788|gb|FK579359.1|FK579359
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|193512132|gb|FK466824.1|FK466824
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|193653697|gb|FK595579.1|FK595579
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|151393735|gb|EV263610.1|EV263610
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|208207017|gb|GE008380.1|GE008380
EST:     AGAAACCCCAAGCTACATTTTCTGCTATTCTACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: AGAAACCCCAAGCTACATTTTCTGC-A-TC-ACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|207702218|gb|GD682973.1|GD682973
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|207717821|gb|GD697293.1|GD697293
EST:     TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGGGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
EST: gi|208296281|gb|GE093175.1|GE093175
EST:     CATTTTCTGCATCACTGGGAGCTGATGGCAAG                         GTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT
genomic: CATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgacttact ... gaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagatttgcttattggataatggtattattagaattcaaattttgaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTTGCTTAATTTGGCTGGCTCTATGGTAGCTTTTGTGTGTTGTACGGCTTCT
                                                ttttc  CT-rich tract
                 ataatggtattattag  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtgtttctcaaaccataggggatgacaaaataattgatagacagacagatttgcttattggataatggtattattagaattcaaattttgaattttcagGTGGAGCCGAAGCGGCGGAAGAGATGACCATGTGAGGTGTGTGTGGTTCTTGCTTAATTTGGCTGGCTCTATGGTAGCTTTTGTGTGTTGTACGGCTTCT

ggtgttt
- - - - tcaaacc
- - - - - - - - - ggggatg
- - - - - - - - - - - - - -aaaataa