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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttacttatataaacagaacagtttagttggtttaaattttagaagcctttttgcaggtgagccatattagtagctgactgaacttttttctgtttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCACAAAAATAACGCACTTGCATTGATTGTTTTGCTTCAATATGTTCCAAGAT

Basic information

species Glycine max
transcript GLYMA06G30030.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G30030.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0065g00900.t01 (Vitis vinifera), 3'ss of exon 1
-----ctttacttatataaacagaacagtttagttggtttaaattttagaagcctttttgcaggtgagccatattagtagctgactgaacttttttctgtttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCACAAAAATAACGCACTTGCATTGATTGTTTTGCTTCAATATGTTCCAAGAT
      |||     ||  |      ||    |    | | |||  | | ||   || |||    |||     |     |  | ||||||  | ||| ||   ||||| ||||| ||||| ||||||||||| || |||||||| ||||||||||| || || || || |||||  |||||||| |||| ||||||||||| ||||
cagttgttttggagtaggattttgccatgcaataaagatgaaacataataatagttattgtttttgataggca---aaaattaactgaaaatgtttttg--acagATTGTCATCTGGTTCATTATACCAGCTACGAGAAGCCCACAAACTGATCATAACAACAATGCCCTTGCGCTGATTGTTCTGCTCCAATATGTTCCCAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193453724|gb|FK416784.1|FK416784
EST:     TAAGATCTGATTTCTTCATTGATTTTACTGCAACACTCCCTCTACCTCAG                         ATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCAC
genomic: TAAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCTCAGgtgtgttgtt ... tctgtttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCAC
EST: gi|209716845|gb|BW665483.1|BW665483
EST:     TAAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCTCAG                         ATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCA
genomic: TAAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCTCAGgtgtgttgtt ... tctgtttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcctttttgcaggtgagccatattagtagctgactgaacttttttctgtttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAAGCCCTCAAACTGATCACAAAAATAACGCACTTGCATTGATTGTTTTGCTTCAATATGTTCCAAGAT
                            agctgac  putative branch site (score: 3)
                                       cttttttctgtttc  putative PPT
                    atattagta  TA-rich tract