1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgcaattttgattggttttatgtttccctttttaaattgttgctctctctctctctctcacacacacagacacacacacaccagttgtctgaactctttgaagttggaaacttattgggttaagtctaattttctgctataagaatatatgtttgtattttgttattgcagGTTTTAGGGGCAGCATGGTATCTTCTATCCTTGGATCGATACACTACATGTTGGAAATCCTTTTGCAAAAAGGAACATAATCCTGAAAACTGCTTTCTTT
species | Glycine max |
transcript | GLYMA06G30030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGCCGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCAT GTTTTAGGGGCAGCATGGTATCTTCTATCCTTGGATCGATACACTACATGTEST: gi|208158640|gb|GD956475.1|GD956475
genomic: CTTGGGCCGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCATgtatgcaatt ... gttattgcagGTTTTAGGGGCAGCATGGTATCTTCTATCCTTGGATCGATACACTACATGT
EST: CTTGGGCCGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCAT GTTTTAGGGGCAGCATGGTATCTTCTATCCTTGGATCGATACACTACATGT
genomic: CTTGGGCCGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCATgtatgcaatt ... gttattgcagGTTTTAGGGGCAGCATGGTATCTTCTATCCTTGGATCGATACACTACATGT
gggttaagtctaattttctgctataagaatatatgtttgtattttgttattgcagGTTTTAGGGGCAGCATGGTATCTTCTATCCTTGGATCGATACACTACATGTTGGAAATCCTTTTGCAAAAAGGAACATAATCCTGAAAACTGCTTTCTTT
gtctaat putative branch site (score: 3)
ttttgtt putative PPT
tataagaatatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaattttgattggttttatgtttccctttttaaattgttgctctctctctctctctcacacacacagacacacacacaccagttgtctgaactctttgaagttggaaacttattgggttaagtctaattttctgctataagaatatatgtttgtattttgttattgcagGTTTTAGGGGCAGCATGGTATCTTCTATCCTTGGATCGATACACTACATGTTGGAAATCCTTTTGCAAAAAGGAACATAATCCTGAAAACTGCTTTCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA