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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcacttatgttacaaagcccttttgacaaaaaatttagtattctattctatccttgcattgttgcagGATTTTAGACAATCTTCCTTTGGTTGTTCCACTACGGCGACCAGATCGTGAGTCATCCTTGGTGTATCTGCATGGCTTCCTAGTTGGTCTTAAAGGACAG

Basic information

species Glycine max
transcript GLYMA06G28090.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698553|gb|BW656441.1|BW656441
EST:     ACAGCCAAAGAGTTCAAGGAAAAGATAGATGATGAATATCGTGTGAACAT                         GATTTTAGACAATCTTCCTTTGGTTGTTCCACTACGGCGACCAGATCGTGA
genomic: ACAGCCAAAGAGTTCAAGGAAAAGATAGATGATGAATATCGTGTGAACATgtaagtcact ... attgttgcagGATTTTAGACAATCTTCCTTTGGTTGTTCCACTACGGCGACCAGATCGTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagcccttttgacaaaaaatttagtattctattctatccttgcattgttgcagGATTTTAGACAATCTTCCTTTGGTTGTTCCACTACGGCGACCAGATCGTGAGTCATCCTTGGTGTATCTGCATGGCTTCCTAGTTGGTCTTAAAGGACAG
        ttttgac  putative branch site (score: 3)
        ttttgacaaaaaattt  TA-rich tract