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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatcaacgttagttgttagtttttgttactttttgagctagatatgttagttttagagcgattatgtttctttgcctaacggactaaatgattcatcagTGTTGGGATAATCATAGCCGGTGCTTTTGTTGCTGGAGCTCGTGACTTGGCATTTGATGCTTTTTCCTATTCAGTTGTATTTGTAGAAAACATGTGTAAG

Basic information

species Glycine max
transcript GLYMA06G25900.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G25900.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G020976_T01 (Zea mays), 3'ss of exon 4
tgatcaacgttagttgttagtttttgttactttttgagctagatatgttagttttagagcgattatgtttctttgcctaacgg--actaaatgattcatcagTGTTGGGATAATCATAGCCGGTGCTTTTGTTGCTGGAGCTCGTGACTTGGCATTTGATGCTTTTTCCTATTCAGTTGTATTTGTAGAAAACATGTGTAAG-
   |     || |     ||  |||||||   |    | |        | ||| |  | | || ||||| | ||  |     |  |   || | || |||||||| |   | ||  ||  ||| || ||||||||||||||||| |||||| |||||||||||  |   ||| |  |||| ||||| |  ||||| |  ||  
--ctttttcttgggatacagcatttgttatgctgaacgttttcagaacttgttctgaatctataatgttccattatccggttgctaaccaaggttttatcagTGTGGCTTTGATTGTATTCGGAGCATTTGTTGCTGGAGCTCGAGACTTGTCATTTGATGCTCGTGGGTATGCTATTGTCTTTGTGGCCAACAT-TACAACA

upper sequence: GLYMA06G25900.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G133226_T04 (Zea mays), 3'ss of exon 4
--tgatcaacgttagttgttagtttttgttactttttgagctagatatgttagttttagagcgattatgtttctttgcctaacgg--actaaatgattcatcagTGTTGGGATAATCATAGCCGGTGCTTTTGTTGCTGGAGCTCGTGACTTGGCATTTGATGCTTTTTCCTATTCAGTTGTATTTGTAGAAAACATGTGTAAG-
  |     ||   | |||||| |  |      |||  || || | || ||  ||| |  | | ||  |||| |  |  ||    |  |   || | || |||||||| |   | ||  ||  ||| || || |||||||||||||| |||||| |||||||||||  |   ||| |  |||| ||||| |  ||||| |   |  
ttttgcatacaacatttgtta-tgctgaacgttttcagaacttggta-gt--gttctgaatctatattgttccactatctggttgttaactaaggttttatcagTGTGGCTTTGATTGTATTCGGAGCATTCGTTGCTGGAGCTCGAGACTTGTCATTTGATGCTCGTGGGTATGCTATTGTCTTTGTGGCCAACAT-TACGACA

upper sequence: GLYMA06G25900.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g05710.t01 (Vitis vinifera), 3'ss of exon 4
tgatcaacgttagttgttagtttttgttactttttgagctagatatgttagttttagagcgattatgtttctttgcctaacgga-----ctaaatgattcatcagTGTTGGGATAATCATAGCCGGTGCTTTTGTTGCTGGAGCTCGTGACTTGGCATTTGATGCTTTTTCCTATTCAGTTGTATTTGTAGAAAACATGTGTAAG
      |   |  ||  || | || |    || | | | |||     |||  | | |    ||  || |  ||| |  || |||     | |||   |||| |||||||||||||||||||   ||||| ||| ||||||||||||| ||| || |||||||  | | |  |||| |  |||| ||||| | |||||| ||||  
---ctcagactgatt--tattcttggaattttatagtgatagcatcattacctattgtatcatgttgctaattttctcaatggaaatttccaaaattttcaccagTGTTGGGATAATCATACTTGGTGCATTTATTGCTGGAGCTCGGGACCTGTCATTTGACTCCTATGGCTATGCTATTGTTTTTGTGGCAAACATTTGTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttagttttagagcgattatgtttctttgcctaacggactaaatgattcatcagTGTTGGGATAATCATAGCCGGTGCTTTTGTTGCTGGAGCTCGTGACTTGGCATTTGATGCTTTTTCCTATTCAGTTGTATTTGTAGAAAACATGTGTAAG
                                     gactaaa  putative branch site (score: 2)
                attatgttt  TA-rich tract