1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caaaaaaatatgtttaagccttaaatattttttttctctttgtatgattttctcagagtgcatgttcctcatatatttctttttctctatatttttgcagATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTG
species | Glycine max |
transcript | GLYMA06G25880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAG ATGGAACAACAAACTTTGCTCATGGTTATCEST: gi|192322372|gb|FK014613.1|FK014613
genomic: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGgtctgggatt ... atttttgcagATGGAACAACAAACTTTGCTCATGGTTATC
EST: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAG ATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGEST: gi|51342073|gb|CO983339.1|CO983339
genomic: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGgtctgggatt ... atttttgcagATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTG
EST: AGTTATAGGAGATGCAGCATCTGATTATNNCTGGTGCATTGATCCTCTAG ATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGEST: gi|120532442|gb|EH260575.1|EH260575
genomic: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGgtctgggatt ... atttttgcagATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTG
EST: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAG ATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGEST: gi|298193777|gb|HO040425.1|HO040425
genomic: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGgtctgggatt ... atttttgcagATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTG
EST: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAG ATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCEST: gi|192301816|gb|FG997688.1|FG997688
genomic: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGgtctgggatt ... atttttgcagATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGC
EST: AGTTATAGGAGATGCAGCATCTGATTATCTCCGGTGCATTGATCCTCTAG ATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGEST: gi|19452428|gb|BM953838.1|BM953838
genomic: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGgtctgggatt ... atttttgcagATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTG
EST: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAG ATGGAACAACAAAC
genomic: AGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGgtctgggatt ... atttttgcagATGGAACAACAAAC
gattttctcagagtgcatgttcctcatatatttctttttctctatatttttgcagATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTG
tatttctttttctcta CT-rich tract
tcatatatttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaaaaatatgtttaagccttaaatattttttttctctttgtatgattttctcagagtgcatgttcctcatatatttctttttctctatatttttgcagATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG