1 5' 3' | 2 5' 3' | 3 5' 3' |
...agaaaagctctcaaaagctgtcaaaaggacttttagccttgtattcaaacatgctcttagtatctgaccttttgtactaatagtgctcatcactctgcagGCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATGCAATCTGGTAGCTTAGTTTTTGTCATGTTTGGGATAAAGGAGTGCATGT
species | Glycine max |
transcript | GLYMA06G20570.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGG GCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATGEST: gi|208212286|gb|GE015713.1|GE015713
genomic: AGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGGgtacttccat ... cactctgcagGCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATG
EST: AGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGG GCTGGTAAATCTAGGAAAAG-AGCAGGCATGCAAAATAGGAAAGCTATTGAEST: gi|193557929|gb|FK515812.1|FK515812
genomic: AGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGGgtacttccat ... cactctgcagGCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAA-T-GGAA-GCTATTGA
EST: AGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGG GCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATGEST: gi|208063732|gb|GD866954.1|GD866954
genomic: AGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGGgtacttccat ... cactctgcagGCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATG
EST: GGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGG GCTGGTAAATCTAGGAGAAGTAGCAGGCATGCAAATGGAAGCTATTGAATGEST: gi|193424584|gb|FK390699.1|FK390699
genomic: AGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGGgtacttccat ... cactctgcagGCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATG
EST: AGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGG GCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATG
genomic: AGTACATCAAAGAGCATGGGACTGAAGCATTTGAGAATCTGCTTGACAGGgtacttccat ... cactctgcagGCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATG
caaacatgctcttagtatctgaccttttgtactaatagtgctcatcactctgcagGCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATGCAATCTGGTAGCTTAGTTTTTGTCATGTTTGGGATAAAGGAGTGCATGT
tactaat putative branch site (score: 1)
tcactct putative PPT
tactaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaagctctcaaaagctgtcaaaaggacttttagccttgtattcaaacatgctcttagtatctgaccttttgtactaatagtgctcatcactctgcagGCTGGTAAATCTAGGAAAAGTAGCAGGCATGCAAATGGAAGCTATTGAATGCAATCTGGTAGCTTAGTTTTTGTCATGTTTGGGATAAAGGAGTGCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
-gaaaagc
- - - - - - - - gctgtca
- - - - - - - - - - - - - - - - - - ccttgta
- - - - - - - - - - - - - - - - - - - - - - - - -catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatctg