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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcttccttgtgcatgttttgtggacttgtagtagtttctatttgatgcaactaacttagtgatggtcgcaatatctttaatgcttatgacttatcaacagattctaattgcaatgtaactactatttgtttttcctaaaggggagggaagctttctaaaaaaaaatccgttttgcagTGTCTGTGCAACTACACTCGCCACTTCGACCAGCTGTTGACGTAGCAGAAGTATTTCTTTGGATGATGGCAGTTCTTACCATATTGTGTGCATCATATTG

Basic information

species Glycine max
transcript GLYMA06G20390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G20390.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G63690.1 (Arabidopsis thaliana), 3'ss of exon 4
gtgagcttccttgtgcatgttttgtggacttgtagtagtttctatttgatgcaactaacttagtgatggtcgcaatat-ctttaatgcttatgacttatcaacagattctaattgcaatgtaactactatttgtttttcctaaaggggagggaagctttctaaaaaaaaatccgttttgcagTGTCTGTGCAACTACACTCGCCACTTCGACCAGCTGTTGACGTAGCAGAAGTATTTCTTTGGATGATGGCAGTTCTTACCATATTGTGTGCATCATATTG
                                                 |    |    |   |     ||   |||| |||      || | | ||      |   |   |||| ||    |  | ||| ||| |    |||               || | ||     | |  ||  ||||||| | ||| ||  |||| |||   |||||||||||||||||||| ||||| ||| | ||| | |||||| ||  |||||| || |||||||| |||||
------------------------------------------------gtatgtccttttctatttcaatcaggatatgcttccgaagttgtcattt-----taagcttgtattgtaa----atcattatatgtatcggttaa--------------ctcaacaatcttctgcacttgtcagTGTCGGCGCAGCTTTACTCCCCAAGACGACCAGCTGTTGACGTAGCTGAAGTCTTTTTGTGGTTAATGGCAATTGGTACCATTTTATGTGCATCTTATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgtttttcctaaaggggagggaagctttctaaaaaaaaatccgttttgcagTGTCTGTGCAACTACACTCGCCACTTCGACCAGCTGTTGACGTAGCAGAAGTATTTCTTTGGATGATGGCAGTTCTTACCATATTGTGTGCATCATATTG
                              ttctaaa  putative branch site (score: 2)
                                           tccgtttt  putative PPT
                             tttctaaaaaaaaat  TA-rich tract