1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...catgtttatatgagtgtttctgcttcttatgatatagcggttgtcatgtcactgtcaagttctttaagctgatggtttttttgtttgatttttaccatagGTGGGGTAAACATACTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGCATGGAAAAAGATTGCTGAACCTGTGATGAGATCTTATATGGAGGCTACA
species | Glycine max |
transcript | GLYMA06G19590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTGTTTCATAAG GTGGGGTAAACATACTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGC
genomic: GATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTCATAAGgttagtgttt ... tttaccatagGTGGGGTAAACATACTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGC
atgtcactgtcaagttctttaagctgatggtttttttgtttgatttttaccatagGTGGGGTAAACATACTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGCATGGAAAAAGATTGCTGAACCTGTGATGAGATCTTATATGGAGGCTACA
tttttacc CT-rich tract
tttttttgtttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtttatatgagtgtttctgcttcttatgatatagcggttgtcatgtcactgtcaagttctttaagctgatggtttttttgtttgatttttaccatagGTGGGGTAAACATACTAGTTGGCAAATGAGTCATGCAGATACAGATTTTGCATGGAAAAAGATTGCTGAACCTGTGATGAGATCTTATATGGAGGCTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
catgttt
- - - - - tgagtgt
- - - - - - - - - -ctgcttc
- - - - - - - - - - - - - - - - - - gcggttg
- - - - - - - - - - - - - - - - - - - - - -tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - tgtcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatg