1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgttcagtatatacgcattttttatcaattgtataactcgcccaagtgtaaaacatcaacataatgtatatgaggatccttttattttcctctatacagATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTGGTTTAGCAAGAGAAGAGTCATTAACTGAGATGATGACTGCTGAGACGGG
species | Glycine max |
transcript | GLYMA06G18730.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTG ATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTGEST: gi|6566830|gb|AW234462.1|AW234462
genomic: TGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTGgtaataattt ... ctctatacagATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTG
EST: AATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTG ATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTGEST: gi|193600029|gb|FK549766.1|FK549766
genomic: AATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTGgtaataattt ... ctctatacagATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTG
EST: AATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTG ATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAA
genomic: AATGGAGTGCCTGCATTCTCATGGGATCATCCACCGTGATCTTAAACCTGgtaataattt ... ctctatacagATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAA
agtgtaaaacatcaacataatgtatatgaggatccttttattttcctctatacagATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTGGTTTAGCAAGAGAAGAGTCATTAACTGAGATGATGACTGCTGAGACGGG
tccttttattttcctc CT-rich tract
aacataatgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttcagtatatacgcattttttatcaattgtataactcgcccaagtgtaaaacatcaacataatgtatatgaggatccttttattttcctctatacagATAACTTGCTATTGACTGAAGACCAGAAAACAGTCAAGCTAGCGGATTTTGGTTTAGCAAGAGAAGAGTCATTAACTGAGATGATGACTGCTGAGACGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - -ctcgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - catcaac