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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaaattttttatttcctatttgcttgatgtcatttgatttgaaaattatgtatgtgatgtatctgaacttagttccattttattgttttgcagAACATTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT

Basic information

species Glycine max
transcript GLYMA06G18400.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294431|gb|FG987360.1|FG987360
EST:     TGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAG                         AACATTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
genomic: TGAGAGTCATGTACCCTGTGAAACGGACATACTGGTTTGACATTTATAAGgtttaaattt ... tgttttgcagAACATTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaaattatgtatgtgatgtatctgaacttagttccattttattgttttgcagAACATTGATAAAATTCCATTGGTGAAGTGTCCAGTGCTAGTAATTCAT
                                       ttttatt  CT-rich tract
                                      attttattgtttt  TA-rich tract