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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG

Basic information

species Glycine max
transcript GLYMA06G17960.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os06g06030.1 (Oryza sativa), 3'ss of exon 2
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
                               | |  |  ||| |  ||  |   |   ||  || ||       | || ||||     || || | |        | |||| |  |   | |  |   |  || |||| |||||  |||||| ||| ||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||| |||||||| |||||  | ||
-----------------------------aaaatgcttgttgctgtttcagaagaccttgctttattgcaaggatggtcacttaatcttacttattg--------ggtcttaatatcacatttcttcttacctgcagCTTCGCAAACTGTGAGGAAAATTATTGAAATAAATCCGTACATGCTTGGAACAATGGCAGGAGGTGCTGCTGATTGTCAATTTTGGCATAGGAACTTGGG

upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G102596_T02 (Zea mays), 3'ss of exon 2
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
                                ||    | | ||  ||  |  ||| | |   |  | | | | |||| || |     | | |   |||   | || |||     ||    | ||     |   |||| || ||  | |||| ||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || |||||||| ||||| || ||
--------------------------------ctgggttctcttagttaagaaaat-cgggactgatgt-tcatttgtgacatgagattgtatactgtttcatatgatctcactgttc---tttttatatttcgcagCCTCACAAACCGTGAGGAAAATTATTGAAATAAATCCTTACATGCTGGGGACAATGGCTGGAGGTGCTGCTGATTGCCAATTTTGGCATAGGAACCTAGG

upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G26340.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
                         |||||  ||| ||||||||   ||||  | || |     | ||   ||   |  |     |  | | |||| |||    |||| |     |||| || ||   |   | |||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || |||||||| ||||| ||
------------------------aaattt--ctaatctttgttgtgttggccagtgata---ctgtacagtaaaagaaaggagaaatt-tctgtgattgctgatgtttt----gtttgtgtttt---tccattcagCGTCGCAATCTGTGAAGAAGATTATTGAAATTAATCCTTATATGCTTGGTACAATGGCTGGTGGTGCTGCTGATTGTCAATTCTGGCACAGAAATCTGGG

upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G13060.2 (Arabidopsis thaliana), 3'ss of exon 4
-----gtgagtgtttgttaattttaactttaatttcactattct--ttgttcctttggtgaatgctgagtttttatgttacttgttactt-ttatctatttgtgg-------------ttgtct--ttgttcttga-attttgagt--gttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
      |||   ||   | |  ||    ||  |||   | || |  | |    |      |||    |||||| ||  |  | |  | |  || |  |   || |             |||| |  || || || |  |||| | |  |||  |    | |||| || || ||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||| || || |||||||| ||||||||
gtacaatgaagattaagttagcttgttgttggttttggttttgtgctggagtgtcaaacaaatttctagttttcattctgttggccattaattgtgaaccagtagaggaaagaaaacgttgtgtgatttttgttaatgttttaaatctgtttaccacattcagCCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTGGAGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTTGG

upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G13060.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
                                ||| | ||  |||  ||||  |    | | || | |           |     | |  | |||| ||   ||||||  ||  ||     ||||  |    | |||| || || ||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||| || || |||||||| ||||||||
------------------------------ttctagttttcattctgttggcca----ttaattgtgaaccagtagaggaaagaaaacgttgtgtgatt---tttgttaatgttttaaatctgtttaccacattcagCCTCACAATCTGTGAAGAAGATTATTGAAATCAATCCTTATATGCTCGGTACAATGGCTGGAGGAGCTGCTGATTGCCAATTCTGGCACAGAAATCTTGG

upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g02900.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
                       | |  |   | |  |||||  || |     |||   ||| | || ||    |||      ||  ||||||||  |  |  |  | |||   | ||            | | ||||||| || ||||||||||| ||||||||||||||||| || |||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| | ||
----------------------ctcatctgatcaaaactttgaaccat---gaaatagggagatcttttggactttggatgcattgcctatttgttttcattgtcttccttccttatt------------tttgcagCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGG

upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S2_300V6.1 (Physcomitrella patens), 3'ss of exon 2
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
            | |  ||  |     || ||||||   ||     | ||| | |||  ||     |   ||| ||| ||| | |   |  |      || | ||||| ||  ||                   |||| ||||| || |||||||| ||| | ||||| || || ||  || | || |||||||||||||||||||| |||||||||||||||||  | ||||| ||
----------agtgaggtttcccaaggttgcactat---ttaaatgtatggagcatgaagaaagggt---ttagttggtacatct---tgctgacaagtg-cattgtttttccatca-----------------cagCCTCGCAATCGGTGAAGAAAATTTTGGAAATCAACCCTTACTTGTTGGGCACAATGGCTGGAGGTGCTGCAGATTGTCAGTTTTGGCAACGAAATCTAGG

upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: PP1S39_347V6.2 (Physcomitrella patens), 3'ss of exon 2
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctc----cagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
                                         | |      ||   | ||    ||  ||| ||   | | |   | | ||  |  ||| ||   |||| ||||  |  | || | |      ||    |||| ||||| || |||||||| ||| | || || || || ||  || | || || ||||| |||||||| ||||||||||||||||||||  ||||||||||
------------------------------------gtcaggatttccaagtatgtacta---ttcaatggtatgagatgcgaatttgtagattaggtggtacatgttattga--taagggtatcgatatattcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCACTATGGCGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGG

upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ25863 (Selaginella moellendorffii), 3'ss of exon 2
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
                                                                                    | | | || ||| |||||| |  |  |||   | ||||| |  ||     ||||||| ||||| |||||||| ||| | ||||| ||||| ||| | || || || |||||||| ||||| || ||||||||||| ||||| || ||||| ||
-------------------------------------------------------------------------------gtaagtgtttcttcgtgtttgtctctacttgtga---tcgagtgatctct---cgcagCATCCCAGTCGGTGAAGAAAATTCTGGAAATCAATCCATATCTCCTGGGAACCATGGCTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTCGG

upper sequence: GLYMA06G17960.1 (Glycine max), 3'ss of exon 3
lower sequence: EFJ04804 (Selaginella moellendorffii), 3'ss of exon 2
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
                                                                                    | | | || ||| |||||| |  |  |||   | ||||| |  ||     ||||||| ||||| |||||||| ||| | ||||| || || ||| | || || || |||||||| ||||| || ||||||||||| ||||| || ||||||||
-------------------------------------------------------------------------------gtaagtgtttcttcgtgtttgtctctacttgtga---tcgagtgatctct---cgcagCATCCCAGTCGGTGAAGAAAATTCTGGAAATCAACCCATATCTCCTGGGAACCATGGCTGGGGGTGCGGCCGATTGTCAGTTCTGGCAGAGAAATCTTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574193|gb|CX547168.1|CX547168
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|192326892|gb|FK015134.1|FK015134
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|13180878|gb|BG352218.1|BG352218
EST:     AGCTGCTGATTCTCGAGCTAGCATGGTAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: AGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|192317518|gb|FK008970.1|FK008970
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|193530927|gb|FK487504.1|FK487504
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|209696468|gb|BW664017.1|BW664017
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|151396982|gb|EV266855.1|EV266855
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|208118245|gb|GD920098.1|GD920098
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|207769493|gb|GD742101.1|GD742101
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|6502012|gb|AW203385.1|AW203385
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|209722634|gb|BW682710.1|BW682710
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|57574361|gb|CX547336.1|CX547336
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|9440180|gb|BE440690.1|BE440690
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|17023638|gb|BM094672.1|BM094672
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|120532998|gb|EH261131.1|EH261131
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|298182845|gb|HO031580.1|HO031580
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|21639185|gb|BM140231.1|BM140231
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|254332573|gb|GR846511.1|GR846511
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|120533057|gb|EH261190.1|EH261190
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|193585349|gb|FK539028.1|FK539028
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|298181007|gb|HO022446.1|HO022446
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|4314044|gb|AI461163.1|AI461163
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|213599779|gb|DB968429.1|DB968429
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
EST: gi|19345836|gb|BM890716.1|BM890716
EST:     GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATAT                         CATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA
genomic: GGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATgtgagtgttt ... ctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG
                                             ctgtctcc  CT-rich tract
                           ttgaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgtttgttaattttaactttaatttcactattctttgttcctttggtgaatgctgagtttttatgttacttgttacttttatctatttgtggttgtctttgttcttgaattttgagtgttggctgtctccagCATCGCAGTCTGTGAAGAAGATTATTGAAATTAATCCGTATATGCTTGGGACAATGGCTGGAGGTGCTGCTGATTGTCAGTTTTGGCACAGGAATCTTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT