1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gcaagtgttttcctaatggtttcatgttttcttttcactttgtgtgtcttaactcaaatggttggttgatctttgactgaatgcaacctgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAGAGACAGAAGAAGAGAAGAAGGCAGCAGAGGAACGGGCAGCTGCAGTGA
species | Glycine max |
transcript | GLYMA06G17930.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|9259946|gb|BE348093.1|BE348093
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|208274596|gb|GE070230.1|GE070230
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|207732416|gb|GD708575.1|GD708575
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGAEST: gi|208326000|gb|GE121026.1|GE121026
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|193377081|gb|FK342718.1|FK342718
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAEST: gi|207710944|gb|GD694008.1|GD694008
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
EST: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTACTGCAGACACAAAG GCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
genomic: GATCTCTAGTTGCAGAGCCTGTTGCAACTCCCCCTGCTGCAGACACAAAGgcaagtgttt ... tgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAA
gtgtcttaactcaaatggttggttgatctttgactgaatgcaacctgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAGAGACAGAAGAAGAGAAGAAGGCAGCAGAGGAACGGGCAGCTGCAGTGA
cctgttcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgttttcctaatggtttcatgttttcttttcactttgtgtgtcttaactcaaatggttggttgatctttgactgaatgcaacctgttcttcagGCTGCTGTTGCTGAGGATGACGATGATGATGATGTGGATTTGTTCGGTGAAGAGACAGAAGAAGAGAAGAAGGCAGCAGAGGAACGGGCAGCTGCAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG