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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacctttattcttttattctggcggatgctgtcttagaattttcatgaagcatttcataccactaataatggcatgtaaatggactattttgtttgttccagCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAG

Basic information

species Glycine max
transcript GLYMA06G17250.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17250.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 3'ss of exon 5
gtgaacctttattcttttattctggcggatgctgtcttagaattttcatgaagcatttcataccactaataatggcatgtaaatggac-tattttgtttgttccagCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAG
                      | |    |  | ||||    |||  || |  | | |  ||| ||  ||  || ||| | |   | | | | || ||   | ||||| |  |||||||||||  || | ||||||||||| ||  ||||||| ||||| ||||| ||||| |||||| ||||| |||| |  ||||| | ||  |
--------------------gttagttacttatttcttcttctttgaatcactcttctgttacaacagatt-tgacatctgagaagccatctgttcttctatgcagCATTTCGGAGATATCCGTGCCCTTTATACTGCCTGTAAACATCGTGGTTTTGTGATGATATCTTACTATGATATAAGGTCAGCGCTGAATGCCAAGATGG

upper sequence: GLYMA06G17250.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 3'ss of exon 5
gtgaacct-ttattcttttattctggcggatgct-gtcttagaattttcatgaagcatttcataccactaataatggcatgtaaatggactattttgtt----tgttccagCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAG
||     | |||||  ||||| |       || | | ||| | | | ||   |||| | |||| | |    |  ||| |  | |||  ||   | ||||    | || |||||||||||||| ||||||||  | || || || |||||| |||| || |||||||||||||||||||||||| ||||||||||   ||||||||||| ||
gtacgtatattatttctttatcccttgaagtgtttgacttgggagtctctgcaagcttgtcat-caaagcttcttggaagttcaattaacacatatgttccattctttcagCAATATGGAGACATCCGAACACTTTACACAGCTTGCAAGCATCGCGGGTTTGTTATGATTTCTTATTATGATATAAGGGCAGCCAGAAATGCAATGAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcatttcataccactaataatggcatgtaaatggactattttgtttgttccagCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAG
             cactaat  putative branch site (score: 2)
                                        ttttgttt  putative PPT
                                      tattttgttt  TA-rich tract