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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatattggattaaatcaaattacaaagaacggcttctgtaccatcaataaactaactattttattgttttgcattaccatgactctagaaaatttaaatttcaactgtatgtgattttggattatgttgtcagGCAAGAGTTGGAAGTTTTTTCTAATGAGGTGATTCGTTTTGGAAATCGTTCGAAGGATCCTCAGTGGCGCAACTTAGACTGTTACTTTGAGAAACAAACC

Basic information

species Glycine max
transcript GLYMA06G16690.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16690.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G320615_T01 (Zea mays), 3'ss of exon 2
---------------------gtatatattggattaaatcaaattacaaagaacggcttctgtaccatcaataaactaactattttattgttttgcattaccatgactctagaaaatttaaatttcaa-ctgtatgtgattttggattatgttgtcagGCAAGAGTTGGAAGTTTTTTCTAATGAGGTGATTCGTTTTGGAAATCGTTCGAAGGATCCTCAGTGGCGCAACTTAGACTGTTACTTTGAGAAACAAACC
                      |||  ||   ||||   |  | |  ||  | |   |  |||        | | |  | |   |   | |     | |    ||   ||   |  |||| |||  || |  ||  | | ||  | | ||    ||||| || |||| ||||| ||| | || ||||| ||||| |||||||||||||  ||||||||||||||||  ||||| ||||| |||||||| ||       
gtttgtgcttgtgttcacttcttat-catgtaattatggcctaatttaattatccattcttgtcgtgcgtgttaccctattcaatatgtatggaaaactgtagtgtgccttttatttttatattgaaaacaataccttaatt-agttaattccatcagGGAAAAGTTAGAAGTATTTACAAAAGAGGTCATTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCATAACTTGGACTGCTACTTTGAAAA-------

upper sequence: GLYMA06G16690.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G046846_T01 (Zea mays), 3'ss of exon 3
----gtatatattggattaaatcaaattacaaagaacggcttctgtaccatcaataaactaactattttatt-gttttgcattaccatgactct--agaaaatttaaatttcaactg-----tatgtgattttggat------------tatgttgt----cagGCAAGAGTTGGAAGTTTTTTCTAATGAGGTGATTCGTTTTGGAAATCGTTCGAAGGATCCTCAGTGGCGCAACTTAGACTGTTACTTTGAGAAACAAACC
    ||  ||| |    | | ||   ||| |||  |   |   |||   | | ||    |   |||||||||  | | |||| | | ||  | |  |||| |  |  | |||||||      ||| || || | | |            ||| | ||    |||| |||||||| |||| || ||||  || ||  |||| |||||||||||||  |||||||||||||||| |||||| ||| | |||||||| ||       
gttagtgaataatct-ctgattctttttataaactataacaattgtctgaaccat---ttgtttattttatttatctagcatcaacctggttatatagaagaaatgtacttcaacttgtttttatatgcttgtagttacctgaagtttttatttggtccaacagGGAAGAGTTGAAAGTGTTCTCTACAGAAGTTGTTCGCTTTGGAAATCGTTGCAAGGATCCTCAGTGGCACAACTTGGACCGCTACTTTGATAA-------

upper sequence: GLYMA06G16690.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G077621_T01 (Zea mays), 3'ss of exon 2
------gtatatattggattaa-atcaaattacaaagaac-ggcttctgtaccatcaataaactaactattttatt-gttttgcattaccatgactctagaaaatttaaatttca-actgtatgtgatt------ttggattatgttgtcagGCAAGAGTTGGAAGTTTTTTCTAATGAGGTGATTCGTTTTGGAAATCGTTCGAAGGATCCTCAGTGGCGCAACTTAGACTGTTACTTTGAGAAACAAACC
      |  | | ||   ||   ||||  | |  | |  |    || |  |   |       |    ||   ||||   | || ||    |    | | |    ||| | ||| | | || |    ||       || | | ||    ||||| ||||||| ||||| ||  | || ||||| ||||| |||||||| ||||  ||||||||||||||||  ||||| ||| | |||||||| ||       
gtttgtgcttgtgttcacttcttatcatgtaattatggcctaatttatccatgcttgtcgtgcgtgttaccctattcaatatgtatggaaaactgtattgtgccttttatttttatattgaaaacaataccttaattagttaattccatcagGGAAGAGTTAGAAGTATTCACAAAAGAGGTCATTCGCTTTGGAAACCGTTGCAAGGATCCTCAGTGGCATAACTTGGACCGCTACTTTGAAAA-------


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgactctagaaaatttaaatttcaactgtatgtgattttggattatgttgtcagGCAAGAGTTGGAAGTTTTTTCTAATGAGGTGATTCGTTTTGGAAATCGTTCGAAGGATCCTCAGTGGCGCAACTTAGACTGTTACTTTGAGAAACAAACC
          aaaatttaaatttcaa  TA-rich tract