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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgccaattttttattctttttttttaatattatttttctactaaattaactgttttgtgaatctggaaatggctagTGCTGTGTTGGCGCATTTCATGTTGAACGAGAAGCTGCAGAAAATGGGCATGCTGGGGTGTCTTCTGTGCATTGTGGGGTCCACTGTGATTGTGCTCCAT

Basic information

species Glycine max
transcript GLYMA06G16670.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16670.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 3'ss of exon 3
---------gtaattgccaattttt-tattctttttttttaatattatt--tttctactaaattaactgttttgtgaatctggaaatggctagTGCTGTGTTGGCGCATTTCATGTTGAACGAGAAGCTGCAGAAAATGGGCATGCTGGGGTGTCTTCTGTGCATTGTGGGGTCCACTGTGATTGTGCTCCAT
          |  |||   |||||| | ||||||||| || ||  ||    ||||||  |   |   |||  | || ||  |  ||||| ||||||||| || ||||| ||  ||||||| ||||| || ||||||||||| ||||||||||||||||| ||||| ||||| ||    |||||||||||||||
gtaaatttatttcttgatgatttttcttttcttttttctttattctaaaagtttctaacaggatgtgtgtactatgtat--gccaatggatagTGCTGTTTTAGCGCACTTTTTGTTGAATGAGAAACTACAGAAAATGGGGATGCTGGGGTGTCTTCTATGCATAGTGGGATCTGTAGTGATTGTGCTCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaatattatttttctactaaattaactgttttgtgaatctggaaatggctagTGCTGTGTTGGCGCATTTCATGTTGAACGAGAAGCTGCAGAAAATGGGCATGCTGGGGTGTCTTCTGTGCATTGTGGGGTCCACTGTGATTGTGCTCCAT
     atattatttttctact  TA-rich tract