1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagtcaccagaaaatttctactgaaaatttacagcctgaccccatatgatgtattgtatacaatcggactgtcaactgtgtagccttatatttgttgcagGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGGCTCACGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATG
species | Glycine max |
transcript | GLYMA06G15900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTACGTGAATGGGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAG GTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCEST: gi|298172759|gb|HO020313.1|HO020313
genomic: TGTACGTGAATGGGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGgtttttattt ... tttgttgcagGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATC
EST: TGTACGTGAATGGGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAG GTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTGAGATC
genomic: TGTACGTGAATGGGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGgtttttattt ... tttgttgcagGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATC
atgatgtattgtatacaatcggactgtcaactgtgtagccttatatttgttgcagGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGGCTCACGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATG
ttatatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtcaccagaaaatttctactgaaaatttacagcctgaccccatatgatgtattgtatacaatcggactgtcaactgtgtagccttatatttgttgcagGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGGCTCACGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - caccaga
- - - - - - - - tctactg
- - - - - - - - - - - - - - - - agcctga
- - - - - - - - - - - - - - - - - - - -ccccata
- - - - - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgtg