1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtccaaatgccaatgctatggacaagtttgaaactatatgtattcttcttcctatgtttgttctacatctctaaaacgcttgtattgcaactttgacagTGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGACCAATCATCAAAAGAGTGCCTCAAACAACTTAATCAG
species | Glycine max |
transcript | GLYMA06G15870.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAG TGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGAEST: gi|24136233|gb|BU926743.1|BU926743
genomic: AAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGgtatttgggt ... actttgacagTGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGA
EST: AAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAG TGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGAEST: gi|23731234|gb|BU763729.1|BU763729
genomic: AAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGgtatttgggt ... actttgacagTGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGA
EST: AAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAG TGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGAEST: gi|15337831|gb|BI498487.1|BI498487
genomic: AAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGgtatttgggt ... actttgacagTGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGA
EST: AAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAG TGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGA
genomic: AAGCTTCTTGGTCGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGgtatttgggt ... actttgacagTGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGA
cttcttcctatgtttgttctacatctctaaaacgcttgtattgcaactttgacagTGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGACCAATCATCAAAAGAGTGCCTCAAACAACTTAATCAG
ctctaaa putative branch site (score: 3)
tatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtccaaatgccaatgctatggacaagtttgaaactatatgtattcttcttcctatgtttgttctacatctctaaaacgcttgtattgcaactttgacagTGATAGTGGACAATTGTGCGCAATAAAAGAAGTCAGGGTTGTCTGTGATGACCAATCATCAAAAGAGTGCCTCAAACAACTTAATCAG
- - - aatgcca
- - - - - - - tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgta