1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agaatgaactccttgtcatggtagcccttttttcattttcatttagcttgattgctcattgctgggattggcctataatttacattataaattattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA
species | Glycine max |
transcript | GLYMA06G15680.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|298170767|gb|HO015743.1|HO015743
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAGGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|192322981|gb|FK016712.1|FK016712
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|192306136|gb|FG993698.1|FG993698
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTACAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|22927036|gb|BU544175.1|BU544175
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|151396812|gb|EV266685.1|EV266685
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|192306137|gb|FG993699.1|FG993699
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTACAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|192317271|gb|FK010502.1|FK010502
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|298174884|gb|HO014801.1|HO014801
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTTGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|151407106|gb|EV276921.1|EV276921
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|151395463|gb|EV265340.1|EV265340
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|192317270|gb|FK010501.1|FK010501
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|192299353|gb|FG990749.1|FG990749
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|7588869|gb|AW704655.1|AW704655
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATEST: gi|58020226|gb|CX706968.1|CX706968
genomic: CGAAAGAGATCAGAAGACTCGCGGATAATATGGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
EST: GGTGCAGCTTGGAAAGGAG GGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
genomic: GGTGCAGCTTGGAAAGGAGgtttgtatga ... attattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGAT
gcttgattgctcattgctgggattggcctataatttacattataaattattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA
gcttgat putative branch site (score: 5)
ttatttt putative PPT
tataatttacattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatgaactccttgtcatggtagcccttttttcattttcatttagcttgattgctcattgctgggattggcctataatttacattataaattattttagGGATCCCAACATGCTGCAAGACAAGCTGCTAGTTTTGTGCGAGGAGATGATGTCATTCACAAGTTGTTTACAGAACTAGCTTATCGGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- aatgaac
- - - - - - -tgtcatg
- - - - - - - - - - - agccctt
- - - - - - - - - - - - - - - - - - - - - - - - tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggattg