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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG

Basic information

species Glycine max
transcript GLYMA06G15520.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g61970.1 (Oryza sativa), 3'ss of exon 3
gtttgtacttatttccatctgtcttaattcactcctt-tgtcttcacattgttctatccttgaatcaaatct------ttttgaat----cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
|  |||    |||| |  || |   || | | || || |    | ||||   |  ||   |||    |  |       || ||  |    ||||||||||  | || |||||||||||||||| |||||| |||||||||||||| || |||||||| |||||||| ||||| || |||||||||||||| ||
gcatgtgtccattttctactattcaaaatgagtctttgtacacttacatctcttcattggtgatatgaccccagtgcgttgtggcttgtgcagGTATTGTGCTTGATTCTGGTGATGGTGTGACTCACACAGTGCCAATCTATGAAGGATATGCACTTCCTCATGCTATTCTTCGGTTGGATCTTGCTGGTCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g73310.1 (Oryza sativa), 3'ss of exon 3
-----------gtttgtact-tatt-tccatctgtcttaat--tcactcctttgtcttcacattgttctatccttgaatcaaat-ctttttgaatca---gGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
           ||| | | | |||| || ||      ||||  ||   |  || | || |  ||| ||  | | |    | ||| || ||| |||||   ||||||||| ||||||| |||||||||||||| || ||||| || |||||||| || |||||||| |||||||| || || ||| ||||||||||||||||
ggtcagtaggtgttagaattatattatctatgctcaataatagtcgtgcaattat-ttaatgttggtcagtgcatatggctaatgctgttttaatcaacagGTATTGTTCTGGACTCGGGTGATGGTGTGAGCCATACTGTTCCCATCTATGAAGGATATGCACTTCCTCATGCAATCCTTCGTCTGGATCTTGCTGGCCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
-----gtttgt-acttatttccatct--gtcttaattcactcct--ttgtcttcacat---tgttctatccttgaa---tcaaatctttttgaat--cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
        ||  ||    ||   ||   | || ||   ||  ||   ||||  ||  |   |||| |||          | |  | | | ||     ||||||||||| | || |||||||||||||| || ||||| ||||| || ||||| || ||||| || |||||||||||||||||||||||||| ||||| ||
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g06390.6 (Oryza sativa), 3'ss of exon 3
gtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
        | ||  |   ||  | |  || |    |||         |   | ||| | ||||     |  | ||||  ||||||| || |||||||||||||||||||| || ||||| |||||||||||||| || ||||| || ||||||||||| || ||| |||| |||||||| ||
-------gtaataactcactcacatggttgagagttttaaaaaatattcactttattcatgaactgt-tgctcttgatgcagGTATCGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTATGAAGGATATGCCCTTCCTCATGCCATCCTGCGTCTGGACCTTGCTGGGCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 3
gtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
   | |  ||||| || | ||   ||  ||     ||    ||||   ||||        |   ||  ||||||     ||||||| ||  | |||||||||||||||||||| |||||||| ||||| ||||| || ||| | || |||||||| || ||||| |||||||||||||||||
--gtatgattattacc-tttgcaatagatcgtg--ttaaaattcaatgtgttggggggcagtgacacttcttttatctgcagGTATCGTGCTTGACTCTGGTGATGGTGTGAGCCACACTGTTCCAATATATGAAGGATATACGCTTCCTCATGCTATCCTCCGGTTGGATCTTGCTGGCCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os10g36650.1 (Oryza sativa), 3'ss of exon 3
-----------gtt--tgtacttatttccatctgtcttaattcactcct-ttgtcttcacattgttctatccttgaatc----aaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
           |||  ||   |  ||| ||  |||   ||| |||      |||| | |  || |    |  ||   |     | || ||||   |  ||||||||| ||||| ||||| |||||||| |||||||| || |||||||| || || ||||| || || ||||||||||||||| | |||||||||||  |
ataaaatttaagttactgccttgttttacagatgttacaatacacaaaaactgtcattatgttctctcgtaatttgtttcttgatattttttgtcaatagGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGATCTTGCTGGTAG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g64630.1 (Oryza sativa), 3'ss of exon 3
----------------------------gtttgtactta---tttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatc-tttttgaat-cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
                             ||||   |||   |    ||||     || |   |  ||  | | ||    ||  |     ||    || |  ||| | ||| ||||||||||  | ||||||||||||||||| ||||||||||| ||||| || || || | | ||||||| ||||| ||||| ||  | ||||||||||| ||
gtatgatgattgctgtacaaaaaaaaccatttgattttaacatacttatctaaaaaaaattgatt-ttaatatccaatgagtagtcgaactgcgctaactagtttataaatgcagGTATTGTACTTGACTCTGGTGATGGTGTAAGTCACACTGTTCCAATATACGAAGGATTTACACTCCCGCATGCTATTCTTCGACTCGATCTTGCTGGGCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
----------gtttgtacttatttccatctgtcttaattca-ctcctttgtcttcacattgttc----tatccttgaatcaaatctttttgaatc---agGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
             |  |   ||    | |  |   | || | |    |||| | ||   |||      | |    |  |      ||| | ||||   |||||||||| | |||||||||||||||||||||||||||||||| || ||||| || ||||| || || ||||||||||| ||| ||||||||||||| ||
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatggtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 3'ss of exon 2
----------gtttgtacttatttccatctgtcttaattc---actcctttgtcttcacattgt--tctatccttgaatcaaatctttttgaa---tcagGTATTGTT-TTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
             | ||   |     |    |   || |    |||   |||| | ||   |||      |  ||        | ||| | ||   |||||||||||| || |||||||||||||||||||| ||||||||||| || || || || ||||| || |||||||||||||| ||||||||||||||||| | 
aaaatgagtataatatatcaagaataaataatgggaagttaaaacttaattgtttacatggtgtggctggtgtttcctctttttttttctcaatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTC-

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
-----------------gtttgtacttatttcca---tctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaat-cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
                      || || ||| ||   | || || || |  |  |||| ||||    ||    |||| |    |  | | | |     | ||||||||||  | |||||||||||||||||||| ||||||||||| || || || || ||||| || |||||||||||||| ||||||||||||||||| ||
aataaaatatggaagttaaacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatctt---gtttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067985_T05 (Zea mays), 3'ss of exon 4
gtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG-----------
                                                                                             |||||||||||||||||||| ||||||||||| || || || || ||||| || |||||||||||||| ||||||||||||||||| ||           
--------------------------------------------------------------------------------------------tGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCGGGACCTCACAG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G006765_T02 (Zea mays), 3'ss of exon 3
gtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatc----tttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
||    |||  ||  |||       || |  |         | || ||| | | ||| |         |     ||  | | ||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| || ||||| || ||||||||||| || ||  | || |||||||| ||
gtaatgactcgttcacatggcgaccaaatttcattaggacttacaaattttcccatcttaattatgggttgctgttcatcattcagGTATTGTATTGGACTCTGGTGATGGTGTCAGCCACACAGTGCCAATCTATGAAGGTTATGCCCTTCCTCATGCCATCCTGCGCCTTGACCTTGCTGGGCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126010_T01 (Zea mays), 3'ss of exon 3
-----------------------gtttgtacttatttccat--ctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaat-cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
                        | | || | || | ||   |     | || ||  | |  | |    | |    |  ||  |   |||||| | | ||  | ||||||||||  |||| || |||||||||||||| ||||| || ||||||||||| || ||  |||| |||||||| |||||||||||||||||||| || ||
gtaagatggctgtcgcctcagatatatatagtgatatgcactacaaagatcatacatacatacggcaatcc-tgacacggtctctttgtcaaatatctctgtgtgcagGTATTGTGATGGATTCCGGTGATGGTGTGAGCCACACGGTTCCAATCTATGAAGGATACACACTTCCTCATGCTATTCTCCGTTTGGATCTTGCGGGGCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G126190_T02 (Zea mays), 3'ss of exon 3
gtttgtacttatttccatc-tgtcttaattcactcctttgtcttcacattgttctatccttga-atcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
||    | |  ||  |||  || |  ||||   |      |   || ||| ||| |||      ||  | |  | ||   ||||||||||| |||||||||||||||||||| || ||||| ||||||||||| || || ||||| || ||||||||||| || ||| | || |||||||| ||
gtaatgattctttaacatggtgaccaaatttcattaggacttcccaaatttttccatctcaattatggattgctgttccttcagGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCACACCGTGCCAATCTACGAAGGTTATGCCCTTCCTCATGCCATCCTGCGTCTTGACCTTGCTGGGCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G030169_T02 (Zea mays), 3'ss of exon 3
------------gtttgtacttatttccatctg-tcttaattcactcctttgtct--tcacattgttctatccttgaatcaaatctttttgaat---cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
            |  ||  ||| |||  |  || |        | |  ||||| |  |    |||  | || |     |  | | | |||   |   ||||||| ||  |||| ||||| |||||||| ||||||||||| ||||||||||| ||||| || ||||| ||||||||||| ||| | |||||||||||| |
ctactgcaccagggctgcccttctttataaatgatacagggatatttttttgtttcatttagttggccaatgcacatttggattttgttttggttgacagGTATCGTCCTGGATTCTGGAGATGGTGTCAGTCACACTGTCCCAATCTATGAAGGCTACGCCCTCCCACATGCCATTCTTCGTCTCGATCTTGCTGGCAG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
---------gtttgtac-ttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttg-----aat---cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
         | | |||    |     |  |  |  || |||    |   | || |||  ||   |     |  ||   | |||||      |||   ||||||||||| | || ||||||||||||||||| || |||||||| || ||||| || ||||| || |||||||| ||||| ||| ||||||||||||| ||
agtatctcagctagtataccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G082484_T01 (Zea mays), 3'ss of exon 3
-----------gtttgtacttatttccatctgtcttaattcactcctttgt-cttcac---attgttctatccttgaatcaaatctttttgaat---cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
              | |    ||    ||   |   |||    |||||| |  |||||    ||| || || |        | | | |||   |   ||||||||||  |||| ||||| || ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||| ||| | |||||||||||  |
tgctgcataaatgatatggggatagaaatggatagaaatattttcctttttatttcactcagttgctcaatgcacattgggattttgttttggttgacagGTATTGTCCTGGATTCTGGAGACGGTGTCAGCCACACTGTCCCAATCTATGAAGGCTATGCCCTCCCGCATGCCATTCTTCGTCTCGATCTTGCTGGTAG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G053299_T01 (Zea mays), 3'ss of exon 3
----------------------------------gtttgtact-tatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
                                    | | ||    | ||    | || | |||       |        |||| | ||| |  ||  ||    || | ||   ||||||||||  | || ||||||||||||||||  ||||| ||||||||||| ||||| || || |||||||||||||||||  |  ||||||||||||||||
gcacgtgtccactttcacctcttattaaagtttttctaggacaacgtctctgattctcgtcattggtgatctgacgacaccattctactacctatgtctcggtactctgtgtg-cagGTATTGTGCTCGATTCTGGTGATGGTGTGACCCACACCGTGCCAATCTACGAGGGATACGCGCTCCCTCATGCCATTCTTAGGCTGGATCTTGCTGGCCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G437445_T01 (Zea mays), 3'ss of exon 4
gtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttcta-tccttgaatcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
    |||  |   | |||      |  ||||   |    |    | | |  | || ||  |||    ||||||| ||   ||||||||||  | |||||||||||||||||||| ||||| || || ||||| || || ||  | || |||||||| ||||| || ||||| |||||||| | 
----gtatgttactgcattaaatctgtttcatatcagcattcaaataatagtgtagtcagtgataggaatctttctg---cagGTATTGTGCTCGACTCTGGTGATGGTGTGAGCCACACCGTCCCTATCTACGAAGGGTACACGCTTCCTCATGCTATTCTTCGATTGGACCTTGCTGGTCA

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G18780.1 (Arabidopsis thaliana), 3'ss of exon 2
gtttgtacttatttccatctgtcttaattcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
||| ||||  ||||    || | |   |  |||| ||  || | |  |||  ||   ||   || |  |    ||||| ||||||||||  |||| |||||||||||||||  |||||||||||||||||| ||||| |   | || ||||||||||| |||||| | || |||||||| ||
gttagtac--attttaggctttttgtttatactcattgatcattat-ttgaactgagctctgattatcttccattgaa-cagGTATTGTGCTGGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGTTTCTCTCTTCCTCATGCCATCCTCCGTCTTGACCTTGCTGGACG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttgtacttatttccatctgtcttaattca--ctcctttgtcttcacattgttctatccttgaatcaaatct--ttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
||| || ||||  || |    ||  | |      |   || |||||  | |  | | | ||| ||     |||  ||||| | ||||||||||  | || |||||||||||||||  |||||||||||||||||| ||||| ||||| || |||||||| || || ||| | |||||||| || ||
gttagttcttaactctaaacatccaagtctgagttatattatcttcttacttgtatttacttaaagtcgttctctttttgtaacagGTATTGTGCTCGATTCTGGTGATGGTGTGTCTCACACTGTGCCAATCTACGAGGGGTATGCTCTTCCTCATGCTATCCTTCGTCTTGATCTTGCGGGTCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G49240.1 (Arabidopsis thaliana), 3'ss of exon 3
----gtttgtacttatttcc-----atctgtcttaattcactcctttgtcttcacattgttctatcct-tgaatca-----aatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
    |||  |  ||| |  |     |     |  | ||   |  | ||| || | ||  || | || | |  ||||     ||    |||   | ||||||||| |||||||||||||||||||||  |||||||||||| ||||| ||||| |   |||| || ||||| || |||||| | || |||||||| ||
gttagttcattattaatgtcgagaaaatgaacaaagttttgttttctgttttta-atgattatgtcatattgatcacagtgaaatgattttctttagGTATTGTGTTGGACTCTGGTGATGGTGTGTCTCACACTGTGCCTATCTACGAGGGTTTCTCACTTCCACATGCTATCCTCCGTCTCGACCTTGCTGGTCG

upper sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 4
gtttgtacttatttccatctgtcttaa----ttcactcctttgtcttcacattgttctatccttgaatcaaat---ctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
||| ||| | |  ||  | ||  ||      |||| |  | | |  |    ||  | || |||    || ||    ||  ||  |  |||||||||  |||| |||||||||||||||||||||||||||||||| ||||| || |||||||| || ||||| || || ||| | || |||||||| ||
gttcgtattaaaatctttttggattggaattttcatttttcttttctgttgttagtgtagcctgagttctaacttgctcctttgactagGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6726695|gb|AW311040.1|AW311040
EST:     TGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTG                         GTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATG
genomic: TGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGgtttgtactt ... tttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcactcctttgtcttcacattgttctatccttgaatcaaatctttttgaatcagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG
                                         tcttttt  CT-rich tract
                                  aatcaaatcttttt  TA-rich tract