1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttaatctctccgatggatgatctggatcttggtacctgaccttactctttgttttgaatgtgatgtataaaatgtgaaggctcttcgtttttggtgcagGACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTCTTATTGGTGTTTTTGTTTCGTCATGGATGGGAGCCACTGTTTTCTGGATTGGAGAGTGGTTCAT
species | Glycine max |
transcript | GLYMA06G15360.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAATATACTCCTAGGTTCGGCATAGATGTGTTTG GACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|193365815|gb|FK329396.1|FK329396
genomic: TCCAATATACTCC-AGGCTCGGCATAGATGTGTTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TCCAATATACTCCAGG-TCGGCATAGATGTGTTTG GACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTCTTATTGGTG-TTTTGEST: gi|192295732|gb|FG990826.1|FG990826
genomic: TCCAATATACTCCAGGCTCGGCATAGATGTGTTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGCATAGATGTGTTTG GACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTCTTATTGGTGTTTTTGEST: gi|193362270|gb|FK324016.1|FK324016
genomic: TGATGGTTTCTTTAGTCCAATATACTCCAGGCTCGGCATAGATGTGTTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTCTTATTGGTGTTTTTG
EST: TCCAATATACTCCAGG-TCGGCATAGATGTGTTTG GACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTC
genomic: TCCAATATACTCCAGGCTCGGCATAGATGTGTTTGgtgagtaatt ... tttggtgcagGACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTC
ctctttgttttgaatgtgatgtataaaatgtgaaggctcttcgtttttggtgcagGACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTCTTATTGGTGTTTTTGTTTCGTCATGGATGGGAGCCACTGTTTTCTGGATTGGAGAGTGGTTCAT
ctcttcgttttt CT-rich tract
atgtataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaatctctccgatggatgatctggatcttggtacctgaccttactctttgttttgaatgtgatgtataaaatgtgaaggctcttcgtttttggtgcagGACTTGGTTTTGTGACATCGTTAGCTTTTGTATTTCTTATTGGTGTTTTTGTTTCGTCATGGATGGGAGCCACTGTTTTCTGGATTGGAGAGTGGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - -tctctcc
- - - - - - - tggatga
- - - - - - - - - - - - - - - - gtacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaagg