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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactttaaggcttttagtagcctataacattttgaaccctctttatagtaaactctagataatatttataataattattccttgaaataaaattgtcagATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTGGACAATGTACGATATTCAAGGGACACAAAGCTTAGTATTGTTTTGGTTT

Basic information

species Glycine max
transcript GLYMA06G15280.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4313494|gb|AI460613.1|AI460613
EST:     GGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAG                         ATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG
genomic: GGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaa ... aaattgtcagATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG
EST: gi|151402112|gb|EV271925.1|EV271925
EST:     TTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAG                         ATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG
genomic: TTGTTGGGATGAATGTGAGTTTAATGTGGAACTCTGTTGGTTTCTATCAGgtaactttaa ... aaattgtcagATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtaaactctagataatatttataataattattccttgaaataaaattgtcagATTGCTAAGCTGAGCATGATTCCAGTATCTTGCTTCCTGGAGGTTGTCTTGGACAATGTACGATATTCAAGGGACACAAAGCTTAGTATTGTTTTGGTTT
           tagataatatttataa  TA-rich tract