1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtttattatggttctgtttttctcacgtgttcatttgattattgttgactctgaacatctctatgatattccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAG
species | Glycine max |
transcript | GLYMA06G14970.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAA ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTTEST: gi|22524332|gb|BU083143.1|BU083143
genomic: TTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgtttat ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTT
EST: CTGGGTTTCAATTCTGTTGGCTTCTATCAA ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGATTATATTTEST: gi|254324663|gb|GR834088.1|GR834088
genomic: CTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgtttat ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTT
EST: TTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAA ATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTT
genomic: TTGGACTTTTAAATTTGAGCCTGGGTTTCAATTCTGTTGGCTTCTATCAAgtatgtttat ... tccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTT
acgtgttcatttgattattgttgactctgaacatctctatgatattccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAG
tattccttttc CT-rich tract
ttcatttgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttattatggttctgtttttctcacgtgttcatttgattattgttgactctgaacatctctatgatattccttttcagATGACTAAGCTGGCAATCATTCCTTGTACTGTATTGTTGGAGACCATATTTCTTGGGAAGAGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA