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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcagctttttattcttttttactcattagatgcatccaatcatgtaatattaatagcaacaacaaactgcattcttttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGAATTAACAA

Basic information

species Glycine max
transcript GLYMA06G14750.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G14750.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0067g03070.t01 (Vitis vinifera), 3'ss of exon 3
--------------gtatttcagctt--tttattcttttttactcattagatgcatccaatcatgtaatattaatagcaacaacaaactgcattcttttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGAATTAACAA
               | || |||     ||   |||  ||||  | ||   |  | ||  | ||    ||||  ||       |    |   |    ||  || ||| | || ||  |   ||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| || ||
gttagtaaagtcaaattttccaggaaagttccctctgctttaaccttttttta-agcccttaattctttatttttatacttttctttttttctctccttccaagcagCAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298169793|gb|HO021153.1|HO021153
EST:     CTATTGCGTGCCAGGGATGACAGGCTACGAGCCTACTTAAGAAAATCGAG                         GAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
genomic: CTATTGCATGCCAGGGATGACAGGCTACGAGC-TACTTAAGAAAATCAAGgtatttcagc ... ttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
EST: gi|298177051|gb|HO023412.1|HO023412
EST:     ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAG                         GAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
genomic: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAGgtatttcagc ... ttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
EST: gi|151406198|gb|EV276013.1|EV276013
EST:     ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAG                         GAATCGTCGGTTACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
genomic: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAGgtatttcagc ... ttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
EST: gi|192299552|gb|FG992580.1|FG992580
EST:     ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAG                         GAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC
genomic: ACTATTGCATGCCAGGGATGACAGGCTACGAGCTACTTAAGAAAATCAAGgtatttcagc ... ttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatccaatcatgtaatattaatagcaacaacaaactgcattcttttttaaacagGAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGAATTAACAA
                tattaat  putative branch site (score: 2)
                                   ctgcattctttttt  putative PPT
      aatcatgtaatattaa  TA-rich tract