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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtattttttccggcatataatcattttaattttaggtgcagcaattttattttatttttttggttcgtattgatggtcacaatatacattgactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG

Basic information

species Glycine max
transcript GLYMA06G14590.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37994656|gb|CF806311.1|CF806311
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|9819498|gb|BE555011.1|BE555011
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193336346|gb|FK297686.1|FK297686
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|208263683|gb|GE063859.1|GE063859
EST:     AAAAACACCACCACCTTTCTGGCATACA-TATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193391937|gb|FK355618.1|FK355618
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|208089129|gb|GD887006.1|GD887006
EST:     AAAAACACCACCACCTTTCTGGCATACA-TATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193342516|gb|FK306776.1|FK306776
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193417126|gb|FK384582.1|FK384582
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|9819411|gb|BE554924.1|BE554924
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|193323640|gb|FK290492.1|FK290492
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
EST: gi|51342137|gb|CO983398.1|CO983398
EST:     AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATG                         ATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT
genomic: AAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGgtatggattt ... gactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattttatttttttggttcgtattgatggtcacaatatacattgactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG
                                         cattgac  putative branch site (score: 3)
                                               cttttt  CT-rich tract
     tttatttttttggtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattttttccggcatataatcattttaattttaggtgcagcaattttattttatttttttggttcgtattgatggtcacaatatacattgactttttagATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - gcatata
- - - - - - - - - - - - - - - - - - tgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgatgg