1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgattgtgtggttctttttgcctgcattttgctgtgtcatatcttctattgttgctaactgttgtttttccctgttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT
species | Glycine max |
transcript | GLYMA06G13720.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|209712615|gb|BW653748.1|BW653748
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: TATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|298164604|gb|HO014249.1|HO014249
genomic: TATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|298192440|gb|HO036522.1|HO036522
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTCATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|151394068|gb|EV263939.1|EV263939
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|298169962|gb|HO018586.1|HO018586
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTTCCTTTGTTTTTCAGEST: gi|209712614|gb|BW653747.1|BW653747
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|9899350|gb|BE608318.1|BE608318
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|254323561|gb|GR836007.1|GR836007
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|151412868|gb|EV282680.1|EV282680
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|193700872|gb|FK639939.1|FK639939
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTEST: gi|192300163|gb|FG989285.1|FG989285
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTT
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|208277879|gb|GE074886.1|GE074886
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGEST: gi|254323562|gb|GR836008.1|GR836008
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
EST: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATG TCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
genomic: GTTTTGGATGATATACTTCCCAAGAAGTCCCCTCTTATAGTTGCTAAATGgtttgattgt ... gttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAG
ttgctgtgtcatatcttctattgttgctaactgttgtttttccctgttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT
tgctaac putative branch site (score: 1)
ctgttgtttttccctg CT-rich tract
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgattgtgtggttctttttgcctgcattttgctgtgtcatatcttctattgttgctaactgttgtttttccctgttcttgtagTCAGAACCATCTCAATCTGGTTCTTGTGAACAACGTGCCTTTGTTTTTCAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTTCTCCATCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA