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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaaagtgttaaattcttttacaacttgactttcaataaattgtataattccttttactttgctgctctctctctttggagtgtgaaggtgaaattactgtcagtttgttgtattatttggaatgagtacgttatatagaaaaaataagtaattgtgatcatatcttttgcagCACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCCCTAGGTTTCAAGATCTTTGCCAGGCAGGAGTTAAGGGGC

Basic information

species Glycine max
transcript GLYMA06G13100.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13100.3 (Glycine max), 3'ss of exon 3
lower sequence: AT5G24120.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaattaaagtgttaaattcttttacaacttgactttcaataaattgtataattccttttactttgctgctctctctctttggagtgtgaaggtgaaattactgtca-gtttg-ttgta----ttatttggaatgagtacg-ttatatagaaaaaataagta-attgtgatcatatcttttgcagCACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCCCTAGGTTTCAAGATCTTTGCCAGGCAGGAGTTAAGGGGC
                                                                               |  | |||| ||        |||  | |  |||| || ||     ||||||  |||   |    | | |  |   | |  ||   || |   | | | | ||||||||||||||||||||||| ||||| || || |||||||| |||   || ||| | |  || || |  || ||||| ||||| || || ||  | |  ||||
------------------------------------------------------------------------------gtgagtgtgtcaaaagatttgtaccattacatttgcttataaaggctatttgttatggtgataactctttgaacttattgtgtgtgttttttccttctatgttgcagCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATACTTTCATGAGTTTACCAACGGACCAAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGC

upper sequence: GLYMA06G13100.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0050g02520.t01 (Vitis vinifera), 3'ss of exon 3
gtaattaaagtgttaaattcttttacaacttgactttcaataaattgtataattccttttactttgctgctctctctctttggagtgtgaaggtgaaattactgtcagtttgttgtatta-tttggaatgagtacgttatatagaaaaaataagtaattgtgatcatatcttt--tgcagCACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCCCTAGGTTTCAAGATCTTTGCCAGGCAGGAGTTAAGGGGC
                                                                               | | | | |      ||  ||  |  || ||| |    | | ||    | |  |   |||| |  ||  ||||  |||  |  |||||    ||  ||||||||||||| || || |||||||| || |||||||| || |||  ||| ||||| | |||||| | ||||||||| || || || |||||||| ||||| |
-----------------------------------------------------------------------------aatcgaaatttatttcagattttcataccattttctctcctgagttctttaggcatgtattatgtgaaatgaatat-taacag--atcatgctgttgatgcagCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTTGCCAATGGCCCAAAGTTTCAAGACCTGTGTCAAGCAGGAGTGAAGGGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120529299|gb|EH257433.1|EH257433
EST:     TAAGGAAAGCAATAGATGTTGGTCAAGCTGCAAGAAATAAACTCATAAAG                         CACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTT
genomic: TAAGGAAAGCAATAGATGTTGGTCAAGCTGCAAGAAATAAACTCATAAAGgtaattaaag ... tcttttgcagCACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTT
EST: gi|17153312|gb|BM143245.1|BM143245
EST:     TAAGGAAAGCAATAGATGTTGGTCAAGCTGCAAGAAATAAACTCATAAAG                         CACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTT
genomic: TAAGGAAAGCAATAGATGTTGGTCAAGCTGCAAGAAATAAACTCATAAAGgtaattaaag ... tcttttgcagCACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaatgagtacgttatatagaaaaaataagtaattgtgatcatatcttttgcagCACAATCTCCGGCTTGTTTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCCCTAGGTTTCAAGATCTTTGCCAGGCAGGAGTTAAGGGGC
                                           tatctttt  CT-rich tract
             ttatatagaaaaaata  TA-rich tract