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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaaaatctattctattaaaacttaaaacaaagatagttcctagtaaaaggtttttttttctttcgatttttagtcccttacgatttttacaatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTCATTGAAATCATATACGTGTTAATCTTCATCGTA

Basic information

species Glycine max
transcript GLYMA06G12740.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12740.4 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g15330.t01 (Vitis vinifera), 3'ss of exon 3
---------tcaaaatctattctattaaaacttaaaacaaagatagttcctagtaaaaggtttttttttctttcgatttttagtcccttacgatttttacaatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTCATTGAAATCATATACGTGTTAATCTTCATCGTA
         |   |  ||||||  || ||  |       | |    |   ||   || | |   || | |||||    ||    ||  || || |    |||   ||||||||||  | || ||||| ||     |||||||| | ||||| ||  | |||||||||||| ||  ||||||||||||||| ||| | |||||||||| |
agaacaatatttcatcctattcctttgaatttctctggcacgcccttcagtatggaaggctccattatactttctgagtt--accctctatgaat----caa---acagGTATGGCCTTCCATTTGTATCAAAGAACAACATACTGGTGTCCACCATCAATGGCACTGGAGCAGCCATTGAAATCATATATGTGCTCATCTTCATCGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197426|gb|HO044905.1|HO044905
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: gi|298190375|gb|HO032496.1|HO032496
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAATGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: gi|298168790|gb|HO009720.1|HO009720
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: gi|298165929|gb|HO008900.1|HO008900
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATGTTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: gi|298171821|gb|HO021413.1|HO021413
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: gi|192326194|gb|FK016986.1|FK016986
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: gi|298191089|gb|HO038568.1|HO038568
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: gi|151413261|gb|EV283069.1|EV283069
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATACTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: gi|298175722|gb|HO018319.1|HO018319
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
EST: gi|209700762|gb|BW683045.1|BW683045
EST:     TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG                         GTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA
genomic: TCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTGgtgagcttct ... caatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaggtttttttttctttcgatttttagtcccttacgatttttacaatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTCATTGAAATCATATACGTGTTAATCTTCATCGTA
                              cccttac  putative branch site (score: 3)
                                       tttttac  putative PPT
      tttttttttctttcga  TA-rich tract