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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaaaatctattctattaaaacttaaaacaaagatagttcctagtaaaaggtttttttttctttcgatttttagtcccttacgatttttacaatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTCATTGAAATCATATACGTGTTAATCTTCATCGTA

Basic information

species Glycine max
transcript GLYMA06G12740.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12740.4 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g15330.t01 (Vitis vinifera), 3'ss of exon 3
---------tcaaaatctattctattaaaacttaaaacaaagatagttcctagtaaaaggtttttttttctttcgatttttagtcccttacgatttttacaatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTCATTGAAATCATATACGTGTTAATCTTCATCGTA
         |   |  ||||||  || ||  |       | |    |   ||   || | |   || | |||||    ||    ||  || || |    |||   ||||||||||  | || ||||| ||     |||||||| | ||||| ||  | |||||||||||| ||  ||||||||||||||| ||| | |||||||||| |
agaacaatatttcatcctattcctttgaatttctctggcacgcccttcagtatggaaggctccattatactttctgagtt--accctctatgaat----caa---acagGTATGGCCTTCCATTTGTATCAAAGAACAACATACTGGTGTCCACCATCAATGGCACTGGAGCAGCCATTGAAATCATATATGTGCTCATCTTCATCGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaggtttttttttctttcgatttttagtcccttacgatttttacaatccacagGTATGGTTTGCCTTTTGTGTCTCCCCACAACATATTAGTGTCAACAGTGAATGGCACTGGATCATTCATTGAAATCATATACGTGTTAATCTTCATCGTA
                              cccttac  putative branch site (score: 3)
                                       tttttac  putative PPT
      tttttttttctttcga  TA-rich tract