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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatagttttcattttattattcttttcccttgaatatgaatctatgtgtaaggctgatatatagccttgtgagttactttaataactttagattcttctaatcttggtttcttatgaccgtttgcagTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGGAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAA

Basic information

species Glycine max
transcript GLYMA06G11540.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11540.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g03540.t01 (Vitis vinifera), 3'ss of exon 2
gtaataata-gttttcattttattattcttttcccttgaatatgaatctatgtgtaaggctgatatatagccttgtgagttactttaataactttagattcttctaatcttggtttctta-tgacc---gtttgcagTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGGAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAA
       || || ||| || | |||    |   | |  ||| |||     ||  | || |   | | |      | ||   |     |        |   | | |   |||| ||  | | |||     |  |||||||||||||||| |||||||| |||||||| || |||||||||||| | || ||  |||||||||| ||||||||||| ||||| || || || || || |
------gtacgtgttctttcttttagaaat---catgaaatttgag---gtgcttcagccatttttgttaaaacgagaagaaagaagaggggaaaggggacatatgggcttgattcataagtgattcatgcatgcagTGGTTTGAAGTCCTTGATGGGCTTTTGGGGAAGCACTGGAGGAATGTAGGCCTACTTTTCAACTGCACTTTCCTTCTCTTTGGCTCCGTGATACAGCTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttactttaataactttagattcttctaatcttggtttcttatgaccgtttgcagTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGGAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAA
     tttaataactttagat  TA-rich tract