1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attcaagctcaactattgaatcatattatgaatactagatcaattttgctctgtctatatattctgtggcatctgaatttatctagtgtggaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCA
species | Glycine max |
transcript | GLYMA06G10930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAAEST: gi|192314071|gb|FK010351.1|FK010351
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAA
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|208249617|gb|GE048628.1|GE048628
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|193341668|gb|FK305942.1|FK305942
genomic: GATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG -AAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|298178909|gb|HO024644.1|HO024644
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|207777531|gb|GD746624.1|GD746624
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|209714511|gb|BW684874.1|BW684874
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|208149384|gb|GD948116.1|GD948116
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAEST: gi|9204366|gb|BE330590.1|BE330590
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGA
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|193673080|gb|FK618942.1|FK618942
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|208156520|gb|GD956830.1|GD956830
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAEST: gi|208175892|gb|GD977245.1|GD977245
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGA
EST: AGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|213589447|gb|DB973183.1|DB973183
genomic: AGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|5605824|gb|AI899922.1|AI899922
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|193640777|gb|FK587674.1|FK587674
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|213593687|gb|DB971709.1|DB971709
genomic: GATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|298191866|gb|HO035948.1|HO035948
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|51345323|gb|CO986056.1|CO986056
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|192329307|gb|FK020226.1|FK020226
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTT-GGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTEST: gi|209722915|gb|BW669461.1|BW669461
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
EST: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACG AAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
genomic: GTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGgtgagatctg ... gaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATT
ttgctctgtctatatattctgtggcatctgaatttatctagtgtggaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCA
tttcc CT-rich tract
tctatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcaagctcaactattgaatcatattatgaatactagatcaattttgctctgtctatatattctgtggcatctgaatttatctagtgtggaatttccagAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-ttcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagtgtg