1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aacaaagaagtaagaagataatcaaacatgacctgaatctcagcaattcagcaataacaaggtgcactggcgtttatactttcgtttggcttttcaatagGTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGGCCTCGGCAAAAG
species | Glycine max |
transcript | GLYMA06G09320.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGTATTTCGTGCATATGGACGACACTGTTCCTCAGAAG GTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGGEST: gi|298183801|gb|HO029014.1|HO029014
genomic: GCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAGgttctatgtg ... ttttcaatagGTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGG
EST: GCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAG GTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGGEST: gi|18041257|gb|BM309559.1|BM309559
genomic: GCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAGgttctatgtg ... ttttcaatagGTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGG
EST: GCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAG GTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGG
genomic: GCAGTATTTCGTGCACATGGACGACACTGTTCCTCAGAAGgttctatgtg ... ttttcaatagGTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGG
attcagcaataacaaggtgcactggcgtttatactttcgtttggcttttcaatagGTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGGCCTCGGCAAAAG
caataac putative branch site (score: 2)
cttttc putative PPT
tttatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaaagaagtaagaagataatcaaacatgacctgaatctcagcaattcagcaataacaaggtgcactggcgtttatactttcgtttggcttttcaatagGTTGTTGTTCACAAGGATAGTCCAAGAGGTGTACATTTTCGACGTGCAGGGCCTCGGCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-acaaagaa
- - - - - - - - - - - - - catgacc
- - - - - - - - - - - - - - - - - - - - - -caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ataacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcactg