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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatttcccttgtttgtctgtgcgtatattatatattattaagaattaagaatattaaaaatgtataattaattttgtatcaactcaccaacacctaatcatatgctgttcagGTATACTTTAAATCGGATGAAGTGCATGCATGCATTGTCACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTT

Basic information

species Glycine max
transcript GLYMA06G09320.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09320.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os06g05860.1 (Oryza sativa), 3'ss of exon 4
gtcatttcccttgtttgtctgtgcgtatattatatattattaagaattaagaatattaaaaatgtataattaattttgtatcaactcaccaacacctaatcatatgctgttcagGTATACTTTAAATCGGATGAAGTGCATGCATGCATTGTCACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTT
                        |||||| | ||  |||| | |    |  | |   ||  || | ||  | | || | |    |  |  ||  |  || || | ||| |||||| |  ||| |||||||||| || ||||||||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||  | |
------------------------gtatataacattgtattcatatactaacacaaataagttggaaaaaaactattctttt---tttctcacttcatattat-tcctggtcagGTGTTTTTTGAATCGGATGAGGTCCATGCATGCATTGTCACATGTGGAGGACTGTGCCCTGGACTGAACACTGTCATTAGGGAAATTGTATGTGGCTTAT

upper sequence: GLYMA06G09320.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g44922.2 (Oryza sativa), 3'ss of exon 4
gtcatttcccttgtttgtctgtgcgtatattatatattattaagaattaagaatattaaaaatgtataattaattttgtatcaactcaccaacacctaatcatatgctgttcagGTATACTTTAAATCGGATGAAGTGCATGCATGCATTGTCACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTT
                           ||| ||||  |        ||   | |||| ||| |    | ||     ||    |||  |  ||||  |   | |   |  || |||| || ||| | || ||||||||| | ||||||||||| || ||||| || || |||||||| || ||||||||||| || ||  | ||||||||| |  
--------------------------gtatgatatgctgccccctcttttaactattgaaactcatcacttgcgcgtgggctaacaga--aacatttggacttgaacc-tttagGTTTATTTTGAGTCAGATGAAGTGAAAGCATGCATTGTAACTTGTGGAGGCCTTTGCCCTGGTCTTAACACTGTCATCAGAGAGCTCGTCTGTGGTTTGG

upper sequence: GLYMA06G09320.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G443985_T04 (Zea mays), 3'ss of exon 4
gtcatttcccttgtttgtctgtgcgtatattatatattattaagaa--ttaagaatatta--aaaatg-tataattaattttgtat--------caactcaccaacacctaat-catatgctgttcagGTATACTTTAAATCGGATGAAGTGCATGCATGCATTGTCACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTT
   || |      | ||  | | || ||||| ||   || ||| ||   ||  ||||      | ||| ||  | |||   |||||          | ||  |   ||||  | | | |  |||| ||||||| ||| || ||||||| || || |||||||||||||| ||||| ||| | |||||||| || || ||||| || ||||||||||| |||||  | |
-gtatatgaaccttatgatttttcgcatattgtacgctaataaaaaagctagaaataagggggagatgatactactaaacgtgtatgctttacttcattcttcgtaacctcgtgcttgtcttgtttagGTATATTTTGAACCGGATGAGGTCCACGCATGCATTGTCACTTGTGGAGGATTGTGCCCTGGACTTAATACTGTGATTAGGGAAATTGTATGTGGCTTAT

upper sequence: GLYMA06G09320.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G816636_T02 (Zea mays), 3'ss of exon 4
---------------------------------gtcatttcccttgtttgtctgt---gcgtatattatatattattaagaat----taagaatattaaaaatgtataattaattttgtatcaactcaccaacacctaatcatatgctgttcagGTATACTTTAAATCGGATGAAGTGCATGCATGCATTGTCACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTT
                                 |  | |  |   | | |    |   | | | |  ||||| ||| |  ||     ||||  | ||  |||    |  | | |||  |     ||    |||  ||  |  | |  || | ||||||| ||| || ||||||| || ||||||||||||||||| ||||| ||| | ||||| || || || ||||| || ||||||||||| |||||  | |
gtatacaaaccttgtgcttttcacattctctacgctaatagcaaagctaggagataagggggagacaatataatatcactaaccttgtaagtttctttcaaaaaccttgtaagtttctttcgttctttgtaacctctggttgtct--tggttagGTATATTTTGAACCGGATGAGGTCCATGCATGCATTGTCACTTGTGGAGGATTGTGCCCGGGACTTAATACTGTGATTAGGGAAATTGTATGTGGATTAT

upper sequence: GLYMA06G09320.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM5G816636_T01 (Zea mays), 3'ss of exon 3
gtcatttcccttgtttgtctgtgcgtatattatatattattaagaat----taagaatattaaaaatgtataattaattttgtatcaactcaccaacacctaatcatatgctgttcagGTATACTTTAAATCGGATGAAGTGCATGCATGCATTGTCACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTT
                |     | | | |  ||||| ||| |  ||     ||||  | ||  |||    |  | | |||  |     ||    |||  ||  |  | |  || | ||||||| ||| || ||||||| || ||||||||||||||||| ||||| ||| | ||||| || || || ||||| || ||||||||||| |||||  | |
----------------gataagggggagacaatataatatcactaaccttgtaagtttctttcaaaaaccttgtaagtttctttcgttctttgtaacctctggttgtct--tggttagGTATATTTTGAACCGGATGAGGTCCATGCATGCATTGTCACTTGTGGAGGATTGTGCCCGGGACTTAATACTGTGATTAGGGAAATTGTATGTGGATTAT

upper sequence: GLYMA06G09320.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g00520.t01 (Vitis vinifera), 3'ss of exon 4
gtcatttcccttgtttgtctgtgcgtatattatatattattaagaattaagaatattaaaaatgtataattaattttgtatcaactcaccaacacctaatcatatgctgttcagGTATACTTTAAATCGGATGAAGTGCATGCATGCATTGTCACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTT
                    || ||| | |  | | || |        |||   | | |  |||||| ||  ||     ||  |||    |||   ||||     | || |||||| || ||| | || ||||||||||| ||||| ||||| || |||||||| || |||||||| |||||||| ||||| ||||||||||| ||||| ||||
--------------------gtacgtct-tcttcttttctcgcagtgcaagtggaatgatgatgtatcatgcat-----atttactatgtaacttttaat-----ggtgctcagGTGTATTTTGAGTCAGATGAAGTGCACGCATGTATTGTAACATGTGGTGGTCTGTGCCCTGGGCTCAACACAGTCATCAGGGAAATTGTGTGTGGCCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgtataattaattttgtatcaactcaccaacacctaatcatatgctgttcagGTATACTTTAAATCGGATGAAGTGCATGCATGCATTGTCACGTGTGGTGGACTCTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTT
     tataattaattttgta  TA-rich tract